Gene detail

Detail information of MD09G1225000 Annotation

Gene ID	Annotation
MD09G1225000	multidrug resistance-associated protein 11

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0375	cobalt/nickel-transporting P-type ATPase D [EC:3.6.3.-] polyglutamine-binding protein 1 peptidylprolyl isomerase domain and WD repeat-containing protein 1 [EC:5.2.1.8] cullin 1 leucyl-tRNA synthetase [EC:6.1.1.4]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1225000	mRNA	Chr09	27690685	27709554	-

Sequences

CDS:

MD09G1225000

GTCTCTACTGTTTTAGGTTTTGGTGCAAATGCAGTGACTGTTTGTATGATAGTTGGGCTCGGAATAACACAACGGACTGGCAGAAGAAGTTGGAGGATGAACTTCATGGAAAAGCTTTTCTTGCTCTTTCTTCCTGCCATTGGAGTATGCATATCATTTTTAGACGGTGCATTACTGTTGAAGAAAGCGCTTGGCATCTTTGTCGCACATCATGAATGGTTTTTCAGATGTTCTCAATTTGCATCATGGACACTTATCATACTGTTCTCAAAGTATTTCAACGGTTGTCAAATTTTCTGCAACCGGATCTTGTGTTTCTGGTGGATTATAAAACTTCTTCTGGGAATACTTCATTTGCTCACAGCATATCCTCCATTCAAGGTCTTATTATGTGTTACTGTTACATTGGACACGATCTTTGGTATATCGATTAACATTATCAGAATAAAGCGGGCATCTTACAAGAGAAGTACAGTTGAAGATTCACTACTTTCAGCTGACACAGATGTTGAGGAAGGCAGCCTTAATGATTCTGGAAACACTCAGGGCTATTTCGATCTTTTGACATTTAGATCTATCACTTCTGTGATGAATCATGGGGTCACAAAGCAGATTGATTTTGAGGATTTGCTTCACCTTCCTTCTGATATGAATCCCTGTTCCTGTCATGATACATTGTTTGGCTGTTGGCAATCCCAACAGAGCAGTTCCCCTGATCCATCACTGTTTAGGGCAATATGTTGTGCATATGGATGGCCATACATTCGTTTGGGCTTGTTGAAGGTACTTAATGACTCTGTTGGTTTTGCGGGACCACTCCTTCTCAATAAACTGATTCGCTTCCTTCAACAAGGTTCGAAGAATATTGATGGCTATGTTCTTGCAATATGCTTGGGCCTCGTATCTATTTTGAAATCAGTTTTGGATACGCAATATACTTTTCATCTTTCAAGACTGAAGTTAAAGTTACGATCTAGTATCATTACTATTATCTATCAGAAGTGCTTAAGTATCAATCTAGCAGAACGATCACAATTTACTGAGGGAGAAATCCAGACATTCATGGCTGTAGATTCTGATCGTACTGTCAACTTGTGTAACAGTTTCCATGATATGTGGAGCTTGCCATTACAAATTGGGGTGGCTTTGTTCCTTCTGTATACACAAGTCAAGTTTGCATTTGTTTCGGGTGTTGCAATTACCATCGCACTGATACCAGTGAATAAATGGATATCTACATTGATTGCAAGTGCTACAATGAAAATGATGCAGCAGAAGGATGAGAGGATAAGGAGGACAGGAGAACTTTTGACATATATCCGCACTTTGAAGATGTATGGGTGGGAGCTTCTGTTTTCTAGCTGGTTGATGGAGACGAGATCATTAGAAGTTATGCACTTAACTACACGGAAGTACTTGGATGCCTGGTGTGTATTTTTTTGGGCTACAACACCAACTCTTTTTTCTCTGTTCACATTTGGGCTTTTCACATTGATGGGACATCAACTTGATGCTGCAACGGTCTTCACCTGTCTTGCATTGTTTAATAATTTGATATCCCCTCTAAATTCATTTCCATGGGTCATTAATGGATTAATTGATGCCATCATATCTCTCAAGCGGTTGACCAGATTTCTGTCTTGCTCTGAGCACAAATCCAAACTAGAAAAGACAGCTGGTTCTGCTTCATCATATATTTCAAATGACCAATCTGAGTTTACTCATGAAGATAAGGCTGTTGTGTTCCATGATTCCTGCTGTTCATGGTCAAGCAGCGATGAAGAGCAATTGAATTTGGTTTTGAATCATGTGACTCTTGCTATTCCGAAGGGTTCCTTTGTTGCAGTAATTGGAGAGGTCGGTTCTGGTAAATCATCTTTGTTGAGTTCAATTTTGGGGGAGATGCAACTTGTCCATGGATCAGTGTATTCCTGTGGTTCTATAGCATATGTACCACAGGTCCCCTGGATTCTATCTGGAACAATACGTGATAACATACTGTTTGGAAAGCATTACGACCCCAGAAGATACTCTGACACTTTAGAGGCAAGTGCGCTAAACCTCGATATTTCATTAATGGTTGGAGGTGACATGGCTTACATTGGAGAAAAGGGAATCAATTTGTCAGGTGGACAGAGAGCTAGAATTGCTTTGGCAAGGGCTATTTATAATGGCTCTGATATGTTTATTCTTGATGACGTCCTTAGTGCAGTTGATGCACAAGTTGCTCGCTGTATTTTATATAAAGCCATTTTGGGTCCACTTATGAACCAGCAGACTCGTGTACTTTGTACCCATAATGTTCAGGCAATATCTTCTGCTGATAGAATAGTTGTCATGGATAAGGGACATGTGAAATGGGTTGGAAGCTCAGCTGATTTGCCAGTTTCTTTGTGTTCAGCATTCTCTCCACTGAATGAATTTGATACTTGTTTACAAAATGAAAGACAAGAGTCCAGTGTCGTAGATACTCTTATGGAAAGCCAACAAACTCTCATCCTAGAAAAAGAAACTGTGCCTGCTTCAGATGGAACACAAGAGATTATTGAAGTTGAGGCGCGAAAAGAGGGCAGAGTAGAACTTACCATCTACAAGAAATATGCCACATTTTCTGGTTGGTTGATTTCAGTTTTAATATGCCTCTCAGCAGTCTTAATGCAAGCTTCTCGTAATGGGAATGATCTGTGGCTCTCAAATTGGGTTGATGCAACAGGAAGAGGTCAGAAAGAATATTCCACATCCTTTTATCTGGTTATGCTTTGCATCTTTTGCATTGTAAATTCAATTCTCACACTAGTGAGGGCCTTCTCATTCGCATTTGGTGGCTTACGAGCTGCTGTTAAGGTGCACGATACACTGCTGAAAAGGATTATCAATGCCCCTGTGCAATTTTTCGATCAGACACCAGGTGGAAGAATGCTAAACAGGTTTTCTTCAGATCTATATACAATTGATGATTCTCTTCCCTTCATTCTTAACATTCTCCTAGCCAATTTTGTTGGCCTGCTGGGCATTGCAATAGTTTTGTCATATGTTCAGGTCTTCTTCTTGCTTTTGTTATTCCCATTCTGGTACATCTACAACCAACTTCAGTGCTTCTACAGATCAACTTCACGGGAATTGCGAAGGCTAGACAGTGTTTCTCGATCTCCCATCTATACATCCTTCTCAGAGACACTTGATGGATCATCAACTATACGGGCATTCAAGTCTGAGGACCTCTTTTTCGGCAGATTCACTGACCAGGTCAAATTGTATCAACAAACTTCATACACAGAGTTAACAGCAAGTTTGTGGCTTTCCCTTCGTCTTCAGTTGTTAGCTGCATTTATCATCTCGTTTATTGCTATCATGGCTGTTATTGGATCTCGTGGAAGTTTACCAATCAATTTCAGTACTCCAGGGTTGGTAGGATTGGCTCTGTCTTATGCAGCTCCAGTTGTCTCATTACTTGGAAGCTTTTTGACAAGTTTCACTGAAACAGAGAAGGAAATGGTTTCTGTTGAAAGAGCTCTTGAGTATATGGACGTTCCGCAAGAAGAAATGGATGGATTCCAATCCTTACATCCCAGTTGGCCTTATCAAGGACAGGTTGAATTCCACAATGTCACCTTGAGATATAAGCCGTCCTTGCCAGCTGCACTTCGTGATGTTAGTTTTACTATTGAAGGAGGGATGGAGGTCGGTATCATTGGAAGGACAGGAGCTGGAAAATCTAGTGTATTGAATGCCCTTTTCCGCCTCACACCAATATGTACAGGATGCATTCTTGTGGATGCCATAAACATAGCTAATGCTCCTATCAGGGATCTTCGTGCACATTTCTCTGTTGTTCCTCAGACTCCATTTTTATTTGAAGGATCATTGAGGGACAACCTTGATCCATTCCGGCTGTGTGATGATATAAACATTTGGAAGGCTTTGGAGAGATGCCATGTTAAAGAGGAAGTAGAAGCAGCAGGGGGGCTAGATATTCACCTAAAGGAATCTAGGATGTCGTTTTCTGTTGGGCAACGGCAGCTTCTTTGCCTTGCACGTGCACTTCTCAGGTCTTCAAAGGTCCTGTGTTTGGATGAATGCACCGCTAATGTTGACACTCAAACAGCATCCATATTACAAAAAACCGTATCCAGTGAATGCAGAGGAATGACAGTTATCACAATTGCTCACCGTATTTCCACTGTCTTGAATATGGACAAGGTCCTGGTCCTTGACCATGGTATGCTGGTTGAACAAGGGAATCCGCAGGCTCTCCTAGAAAATGAGTTCTCCAGATTTTCAAGTTTTGCTAAAGCTTCGACAATGTGAGTACCAAACAAGTTCTGCTGTGCTCATTGCCAGACGCCTTGCAATCTGCAAGTTTGATACGAAGGGGAAGTCATAGTTTATTGTAAGTTTGTAACTTGTTATTGGCAATGAAGTAACGTCACTGTTAAATACAGGCATGTAGCCAAGGACAGTTTAACGTCGAGTATAAACATCAACTGATGAATTAATCTGTACTTGACCTTCTAGGTAGTGATATCTCAATACGTCTCTGCTGCTTGGGAAATCGAAAACCTGAAATCAGATGTAACCCGTTAGTATTTATGTTTGTTTCTATTAAAAATTTCCATTACATAGCTGTAGAAAAGGTATAAAGTTGTCGTAGTAATAACATTTGCTGTGGTATAGAAGAAATTACATAGTAAATGTTTATGCTTGAATTCTTATGGCACAGTTTTACATAATATGAGATGCATTGTTC

Protein:

Gene family

Gene family	Subfamily
Transporter family	ABC

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G07680.1	1	ABCC13;ATMRP11;MRP11\|ATP-binding cassette C13;multidrug resistance-associated protein 11
Prunus persica	Prupe.3G098500.1.p	1	multidrug resistance-associated protein 11
Prunus persica	Prupe.3G098500.4.p	0.66	multidrug resistance-associated protein 11
Pyrus communis	PCP043827.1	1	-
Rosa multiflora	Rmu_sc0001314.1_g000005.1	1	-
Rubus occidentalis	Ro06_G16666	1	-
Fragaria vesca	mrna15834.1	1	multidrug resistance-associated protein 11
Vitis vinifera	GSVIVT01015960001	1	multidrug resistance-associated protein 11
Solanum lycopersicum	Solyc03g117540.2.1	1	multidrug resistance-associated protein 11
Populus trichocarpa	Potri.003G182600.1	1	multidrug resistance-associated protein 11
Nicotiana benthamiana	Niben101Scf03561g01025.1	1	Lipid A export ATP-binding/permease protein MsbA
Oryza sativa	LOC_Os06g08560.1	1	"multidrug resistance-associated protein 11, putative, expressed"
Zea mays	GRMZM2G081573_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0016887	ATPase activity	molecular_function
GO:0016021	integral component of membrane	cellular component
GO:0005524	ATP binding	molecular_function
GO:0055085	transmembrane transport	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.23	ABC_tran	586	718	1.60E-16
PF00005.23	ABC_tran	1200	1347	5.70E-26

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.75716
SRR5252888	dormant buds	no	dormant buds(0 month)	16.211
SRR5252889	dormant buds	no	dormant buds(0 month)	15.084
SRR5252886	dormant buds	no	dormant buds(1 months)	14.3075
SRR5252887	dormant buds	no	dormant buds(1 months)	11.2068
SRR5252884	dormant buds	no	dormant buds(2 months)	19.0202
SRR5252882	dormant buds	no	dormant buds(3 months)	16.2254
SRR5252883	dormant buds	no	dormant buds(3 months)	17.1434
SRR5252880	dormant buds	no	dormant buds(4 months)	18.4762
SRR5252881	dormant buds	no	dormant buds(4 months)	15.7707
SRR5252878	bud break	no	bud break	14.8342
SRR5252879	bud break	no	bud break	8.20538
SRR3744766	flower	no	mature	5.29272
SRR3744767	flower	no	mature	5.34635
SRR3744768	flower	no	mature	5.21496
SRR6308190	stigmas	no	open flowers	5.79901
SRR6308181	styles	no	open flowers	4.58296
SRR6308188	filaments	no	open flowers	3.50225
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.58604
SRR6308192	pollen	no	open flowers	0.641486
SRR6308191	petals	no	open flowers	2.25044
SRR6308194	sepals	no	open flowers	2.87709
SRR6308193	receptacles	no	open flowers	3.57525
SRR6308189	ovaries	no	open flowers	4.45997
SRR3384922	fruit	no	1 week after full bloom	1.81199
SRR3384921	fruit	no	2 week after full bloom	1.7474
SRR3384920	fruit	no	3 week after full bloom	2.13522
SRR3384919	fruit	no	4 week after full bloom	1.8566
SRR3384923	fruit	no	5 week after full bloom	2.09666
SRR3384918	fruit	no	6 week after full bloom	1.62767
SRR3384917	fruit	no	8 week after full bloom	1.90655
SRR3384916	fruit	no	10 week after full bloom	2.49116
SRR3384915	fruit	no	12 week after full bloom	2.06156
SRR3384914	fruit	no	14 week after full bloom	2.16466
SRR3384913	fruit	no	16 week after full bloom	1.82949
SRR3384912	fruit	no	18 week after full bloom	2.19176
SRR3384911	fruit	no	19 week after full bloom	2.15471
SRR3384910	fruit	no	20 week after full bloom	1.17958
SRR768128	whole fruit	no	25 days post anthesis	5.58804
SRR768129	whole fruit	no	35 days post anthesis	1.5505
SRR768130	whole fruit	no	60 days post anthesis	2.34327
SRR768131	whole fruit	no	87 days post anthesis	3.44492
SRR7343308	immature fruit flesh	no	immature	4.76298
SRR7343309	immature fruit flesh	no	immature	4.65195
SRR6320494	ripe fruit flesh	no	mature	4.1216
SRR5405143	ripe fruit peel	no	mature	6.8633
SRR6320572	ripe fruit peel	no	mature	3.52269
SRR7403504	fruit	uninfected	mature	3.2356
SRR7403506	fruit	uninfected	mature	3.30175
SRR7403507	fruit	uninfected	mature	3.24198
SRR7403500	fruit	infected with penicillium expansum	mature	0.2369
SRR7403501	fruit	infected with penicillium expansum	mature	0.210932
SRR7403508	fruit	infected with penicillium expansum	mature	0.15206
SRR7403502	fruit	infected with penicillium expansum	mature	0.333098
SRR7403503	fruit	infected with penicillium expansum	mature	0.350159
SRR7403505	fruit	infected with penicillium expansum	mature	0.511471
SRR1613973	Central seeds	no	20DAPF	2.74227
SRR1613974	Central seeds	no	20DAPF	3.8325
SRR1613975	Central seeds	no	20DAPF	2.72374
SRR1613976	Lateral seeds	no	20DAPF	2.82866
SRR1613977	Lateral seeds	no	20DAPF	2.65509
SRR1613978	Lateral seeds	no	20DAPF	3.19495
SRR3744786	stem	no	mature	7.07279
SRR3744787	stem	no	mature	6.77039
SRR3744772	stem	no	mature	7.48928
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.63127
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.39577
SRR1089478	leaf	Virus-free	plantlets	2.25975
SRR1089477	leaf	ASGV-infected	plantlets	2.39476
SRR767660	leaf	uninfected	fully developed	1.84157
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.23181
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.1397
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.56108
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.76934
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.60618
SRR6308182	young leaf	no	immature leaves	5.52077
SRR3744769	leaf	no	mature	7.19277
SRR3744770	leaf	no	mature	8.18748
SRR3744771	leaf	no	mature	8.39333
SRR5405145	leaf	no	mature	4.34966
SRR6320561	leaf	no	mature	3.09961