Gene detail

Detail information of MD09G1235900 Annotation

Gene ID	Annotation
MD09G1235900	Ribosomal L5P family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1235900	mRNA	Chr09	29615870	29618053	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.3G113800.1.p	1	Ribosomal L5P family protein
Pyrus x bretschneideri	Pbr005396.1	1	-
Rosa multiflora	Rmu_sc0002279.1_g000001.1	1	-
Rosa multiflora	Rmu_sc0003629.1_g000006.1	1	-
Rosa multiflora	Rmu_sc0009975.1_g000014.1	1	-
Rubus occidentalis	Ro03_G05273	1	-
Populus trichocarpa	Potri.006G181600.1	1	Ribosomal L5P family protein
Populus trichocarpa	Potri.011G069200.1	1	Ribosomal L5P family protein
Populus trichocarpa	Potri.011G068900.1	0.818	Ribosomal L5P family protein
Populus trichocarpa	Potri.006G181500.2	0.636	Ribosomal L5P family protein
Nicotiana benthamiana	Niben101Scf02381g08015.1	1	50S ribosomal protein L5
Nicotiana benthamiana	Niben101Scf06183g07014.1	1	50S ribosomal protein L5
Nicotiana benthamiana	Niben101Scf01250g01002.1	1	50S ribosomal protein L5
Nicotiana benthamiana	Niben101Scf00536g01002.1	0.75	50S ribosomal protein L5
Nicotiana benthamiana	Niben101Scf09169g01002.1	0.667	50S ribosomal protein L5

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02868	large subunit ribosomal protein L11e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00281.15	Ribosomal_L5	9	62	6.40E-21
PF00673.17	Ribosomal_L5_C	66	164	2.30E-23

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	42.1035
SRR5252888	dormant buds	no	dormant buds(0 month)	14.6089
SRR5252889	dormant buds	no	dormant buds(0 month)	21.0605
SRR5252886	dormant buds	no	dormant buds(1 months)	11.2721
SRR5252887	dormant buds	no	dormant buds(1 months)	10.8112
SRR5252884	dormant buds	no	dormant buds(2 months)	13.7658
SRR5252882	dormant buds	no	dormant buds(3 months)	18.9544
SRR5252883	dormant buds	no	dormant buds(3 months)	28.0488
SRR5252880	dormant buds	no	dormant buds(4 months)	26.1564
SRR5252881	dormant buds	no	dormant buds(4 months)	34.2169
SRR5252878	bud break	no	bud break	21.1677
SRR5252879	bud break	no	bud break	30.566
SRR3744766	flower	no	mature	10.9692
SRR3744767	flower	no	mature	12.113
SRR3744768	flower	no	mature	12.6385
SRR6308190	stigmas	no	open flowers	4.37528
SRR6308181	styles	no	open flowers	5.15729
SRR6308188	filaments	no	open flowers	16.0493
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.11714
SRR6308192	pollen	no	open flowers	15.2672
SRR6308191	petals	no	open flowers	10.8501
SRR6308194	sepals	no	open flowers	11.6883
SRR6308193	receptacles	no	open flowers	17.0843
SRR6308189	ovaries	no	open flowers	8.95044
SRR3384922	fruit	no	1 week after full bloom	55.6566
SRR3384921	fruit	no	2 week after full bloom	38.7797
SRR3384920	fruit	no	3 week after full bloom	26.0012
SRR3384919	fruit	no	4 week after full bloom	27.0119
SRR3384923	fruit	no	5 week after full bloom	15.6881
SRR3384918	fruit	no	6 week after full bloom	17.8726
SRR3384917	fruit	no	8 week after full bloom	16.6616
SRR3384916	fruit	no	10 week after full bloom	17.335
SRR3384915	fruit	no	12 week after full bloom	19.6041
SRR3384914	fruit	no	14 week after full bloom	13.6279
SRR3384913	fruit	no	16 week after full bloom	8.67293
SRR3384912	fruit	no	18 week after full bloom	7.77466
SRR3384911	fruit	no	19 week after full bloom	5.35958
SRR3384910	fruit	no	20 week after full bloom	6.65951
SRR768128	whole fruit	no	25 days post anthesis	17.5878
SRR768129	whole fruit	no	35 days post anthesis	19.1699
SRR768130	whole fruit	no	60 days post anthesis	14.016
SRR768131	whole fruit	no	87 days post anthesis	4.91118
SRR7343308	immature fruit flesh	no	immature	17.5079
SRR7343309	immature fruit flesh	no	immature	21.3815
SRR6320494	ripe fruit flesh	no	mature	3.67928
SRR5405143	ripe fruit peel	no	mature	8.37882
SRR6320572	ripe fruit peel	no	mature	9.44807
SRR7403504	fruit	uninfected	mature	7.39661
SRR7403506	fruit	uninfected	mature	6.02019
SRR7403507	fruit	uninfected	mature	6.38754
SRR7403500	fruit	infected with penicillium expansum	mature	5.95445
SRR7403501	fruit	infected with penicillium expansum	mature	2.55787
SRR7403508	fruit	infected with penicillium expansum	mature	4.35842
SRR7403502	fruit	infected with penicillium expansum	mature	4.92493
SRR7403503	fruit	infected with penicillium expansum	mature	5.06649
SRR7403505	fruit	infected with penicillium expansum	mature	4.8144
SRR1613973	Central seeds	no	20DAPF	35
SRR1613974	Central seeds	no	20DAPF	32.1577
SRR1613975	Central seeds	no	20DAPF	36.2767
SRR1613976	Lateral seeds	no	20DAPF	28.929
SRR1613977	Lateral seeds	no	20DAPF	38.3323
SRR1613978	Lateral seeds	no	20DAPF	31.9707
SRR3744786	stem	no	mature	19.3813
SRR3744787	stem	no	mature	20.9354
SRR3744772	stem	no	mature	20.1665
SRX765691	seedling shoot apex	no	4-6 week old seedling	35.4792
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	30.0295
SRR1089478	leaf	Virus-free	plantlets	9.60993
SRR1089477	leaf	ASGV-infected	plantlets	8.91278
SRR767660	leaf	uninfected	fully developed	16.5094
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	46.0266
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	24.4056
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	13.6764
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	14.513
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	10.1571
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	9.71911
SRR6308182	young leaf	no	immature leaves	58.528
SRR3744769	leaf	no	mature	18.6262
SRR3744770	leaf	no	mature	17.6601
SRR3744771	leaf	no	mature	19.7075
SRR5405145	leaf	no	mature	4.85827
SRR6320561	leaf	no	mature	11.966