Gene detail

Detail information of MD09G1248900 Annotation

Gene ID	Annotation
MD09G1248900	Tetratricopeptide repeat (TPR)-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0163	pyrimidine ribonucleotide biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1248900	mRNA	Chr09	31829417	31832125	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.3G136700.1.p	1	Tetratricopeptide repeat (TPR)-like superfamily protein
Vitis vinifera	GSVIVT01020533001	1	Tetratricopeptide repeat (TPR)-like superfamily protein
Populus trichocarpa	Potri.013G133000.1	1	Tetratricopeptide repeat (TPR)-like superfamily protein
Oryza sativa	LOC_Os10g35760.1	0.626	"pentatricopeptide, putative, expressed"
Oryza sativa	LOC_Os10g35750.1	1	"pentatricopeptide, putative, expressed"
Zea mays	GRMZM2G131817_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.02903
SRR5252888	dormant buds	no	dormant buds(0 month)	2.60729
SRR5252889	dormant buds	no	dormant buds(0 month)	2.71836
SRR5252886	dormant buds	no	dormant buds(1 months)	3.75365
SRR5252887	dormant buds	no	dormant buds(1 months)	2.58137
SRR5252884	dormant buds	no	dormant buds(2 months)	3.09184
SRR5252882	dormant buds	no	dormant buds(3 months)	4.60443
SRR5252883	dormant buds	no	dormant buds(3 months)	4.24936
SRR5252880	dormant buds	no	dormant buds(4 months)	6.09575
SRR5252881	dormant buds	no	dormant buds(4 months)	6.40171
SRR5252878	bud break	no	bud break	3.08248
SRR5252879	bud break	no	bud break	7.35417
SRR3744766	flower	no	mature	0.940506
SRR3744767	flower	no	mature	0.839585
SRR3744768	flower	no	mature	0.636141
SRR6308190	stigmas	no	open flowers	0.523768
SRR6308181	styles	no	open flowers	0.643784
SRR6308188	filaments	no	open flowers	1.35254
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.199479
SRR6308192	pollen	no	open flowers	0.566817
SRR6308191	petals	no	open flowers	0.908738
SRR6308194	sepals	no	open flowers	0.560427
SRR6308193	receptacles	no	open flowers	1.59629
SRR6308189	ovaries	no	open flowers	0.7785
SRR3384922	fruit	no	1 week after full bloom	1.6714
SRR3384921	fruit	no	2 week after full bloom	0.761763
SRR3384920	fruit	no	3 week after full bloom	0.503059
SRR3384919	fruit	no	4 week after full bloom	0.968234
SRR3384923	fruit	no	5 week after full bloom	1.25226
SRR3384918	fruit	no	6 week after full bloom	0.656013
SRR3384917	fruit	no	8 week after full bloom	0.414363
SRR3384916	fruit	no	10 week after full bloom	1.23038
SRR3384915	fruit	no	12 week after full bloom	0.955351
SRR3384914	fruit	no	14 week after full bloom	1.54426
SRR3384913	fruit	no	16 week after full bloom	0.98739
SRR3384912	fruit	no	18 week after full bloom	1.75569
SRR3384911	fruit	no	19 week after full bloom	0.888732
SRR3384910	fruit	no	20 week after full bloom	1.64807
SRR768128	whole fruit	no	25 days post anthesis	1.16552
SRR768129	whole fruit	no	35 days post anthesis	1.45445
SRR768130	whole fruit	no	60 days post anthesis	1.36557
SRR768131	whole fruit	no	87 days post anthesis	1.54182
SRR7343308	immature fruit flesh	no	immature	1.81843
SRR7343309	immature fruit flesh	no	immature	2.85089
SRR6320494	ripe fruit flesh	no	mature	0.746826
SRR5405143	ripe fruit peel	no	mature	0.579481
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.537559
SRR7403506	fruit	uninfected	mature	0.567853
SRR7403507	fruit	uninfected	mature	1.04199
SRR7403500	fruit	infected with penicillium expansum	mature	0.126304
SRR7403501	fruit	infected with penicillium expansum	mature	0.0937164
SRR7403508	fruit	infected with penicillium expansum	mature	0.270238
SRR7403502	fruit	infected with penicillium expansum	mature	0.626799
SRR7403503	fruit	infected with penicillium expansum	mature	0.233362
SRR7403505	fruit	infected with penicillium expansum	mature	0.576851
SRR1613973	Central seeds	no	20DAPF	5.24376
SRR1613974	Central seeds	no	20DAPF	4.975
SRR1613975	Central seeds	no	20DAPF	4.87881
SRR1613976	Lateral seeds	no	20DAPF	4.91268
SRR1613977	Lateral seeds	no	20DAPF	4.66815
SRR1613978	Lateral seeds	no	20DAPF	4.45515
SRR3744786	stem	no	mature	0.745868
SRR3744787	stem	no	mature	0.677956
SRR3744772	stem	no	mature	0.696073
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.33056
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.79988
SRR1089478	leaf	Virus-free	plantlets	0.677211
SRR1089477	leaf	ASGV-infected	plantlets	0.656632
SRR767660	leaf	uninfected	fully developed	6.18341
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.73686
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.447349
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.21144
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.62787
SRR6308182	young leaf	no	immature leaves	2.73518
SRR3744769	leaf	no	mature	0.59782
SRR3744770	leaf	no	mature	0.888474
SRR3744771	leaf	no	mature	0.703915
SRR5405145	leaf	no	mature	1.80715
SRR6320561	leaf	no	mature	3.10918