Gene detail

Detail information of MD09G1251900 Annotation

Gene ID	Annotation
MD09G1251900	pre-mRNA splicing factor-related

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1251900	mRNA	Chr09	32296331	32302198	+

Sequences

CDS:

MD09G1251900

GCATAGGATCACACATCGATCTCGCCATGGTGTTCATCACATCCCCCAATCACAAAACCCTAACCCTAAATCTAAACCCTAAGACCACCACCCTCCAAGCCCTAAAGCTCCAAATCGAGCAAAATTCCCACATACCCATTCCTCTGCAGCGCCTATTCATCTCGCAAAGCCTCCAATTACTCACCCAATCCGACTCCGCCCTCCTCTCCGACCTCGGAATCCTACCCCTCTCAACCCTAACTCTTCACATCCCCTTATTCGGCGGCACCCAACCTCCCGCCGTCCCTAAACCCCGCCTCGAGTTCCTCAACTCCAAGCCTCCCCCGAATTATGTCGCAGGGCTCGGCCGTGGTGCCACTGGCTTCACCACCAGGTCTGATATCGGGCCCGCACGTGCCGCGCCCGACCTGCCTGATAGGTCGGCCACCACAATCGGAGGCGCTACTGCTCCTGCTGCGCCGCCTGGGGTCGGCCGAGGGCGCGGGAAGCCCGACGAAGAGGAGGAGGATGAAGGGGAGGATAAAGGGTACGATGAGAATCAGAAGTTTGATGAATTCGAAGGGAATGATGTTGGGTTGTTTGCATCGGCGGAATACGATGATGAGGACAAGGAGGCTGATGCGGTGTGGGAAGCCATTGAGCAAAGAATGGACTCTCGGAGGAAGGACAGGAGAGAAGCACGGTTGAAAGAAGAGATTGAAAAGTACAGAGCTTCGAACCCAAAGATCACGGAGCAGTTTGCCACTCTGAAGAGGAAGTTGTACACTGTGTCTGCTCAGGAATGGGAGAGCATACCGGAAATTGGAGACTATTCGTCGAGGAACAAGAAGAAGAGATTCGAGAGCTTTGTACCGGTGCCCGATACACTTTTAGAGAAAGCAAGACAGGAAAAGGAGCATGTTACGGCATTGGACCCCAAGAGTAGGGGAGCTGGTGGTACGGAGACTCCGTGGTCTCAAACTCCGGTTACGGATTTGACTGCTGTAGGTGAGGGTAGAGGTACTGTTTTGTCATTGAAATTAGATAGGCTTTCTGATTCTGTTTCTGGATTGACGGTTGTGGACCCGAAAGGGTACCTTACTGATCTTAAGAGCATGAAGATTACTAGTGATGCAGAGATTTCAGATATTAAAAAGGCTAGGTTGTTGCTTAAGAGTGTTATACAGACGAATCCAAAGCACCCACCTGGTTGGATTGCGGCTGCAAGGCTGGAGGAGGTGGCTGGGAAGATTCAGGCAGCTAGACAATTGATTCAGAAAGGGTGTGAAGAATGTCCTAAGAGTGAGGATGTGTGGTTAGAGGCGTGTAGGCTTTCAAGCCCTGATGAAGCTAAGTCTGTGATTTCTAAGGGTGTGAAGTCGATTCCCAATTCGGTGAAGTTGTGGATGCAGGCTGCGAAATTGGAGCGTGATGATTTGAATAGGAGCAGGGTATTGAGGAAAGGTTTGGAACACATTCCCGATTCTGTTAGGCTATGGAAGGCAGTGGTGGAGCTTGCCAATGAGGAGGATGCAAGACTTTTGCTTCATAGGGCTGTGGAGTGTTGTCCCTTGCACATTGAGTTATGGCTTGCACTTGCAAGATTAGAAACTTATGATAATGCGAGGAAGGTCCTTAATAGGGCGAGAGAGAAGTTATCAAAAGAGCCTGCCATTTGGATCACAGCAGCGAAGTTGGAGGAAGCTAATGGGAACACGGCCATGGTTGGGAAGATTATTGAAAGGGGTATAAGGGCTTTGCAAAGAGAAGGGTTGGCGATTGATAGAGAGGCATGGATGAAGGAGGCTGAAGCTGCTGAGCGTGCAGGATCTGTTGCAACTTGCCAAGCAATCATTCGGAACACAATTGGGATTGGTGTGGAGGAAGAGGATAGGAAGAGGACATGGGTTGCTGATGCTGAGGAATGCAAGAAAAGGGGTTCCATTGAAACAGCCAGAGCTATTTATGCACACGCACTTACTGTCTTTTTAACCAAGAAGAGCATATGGCTCAAAGCCGCACAGCTTGAAAAGAGCCATGGGACTAGGGAATCTCTTGATGCTTTACTTCGTAAAGCGGTGACATACCGACCACAGGCTGAAGTCTTGTGGCTTATGGGTGCTAAGGAGAAGTGGCTTGCTGGGGATGTGCCCGCTGCTCGTGCCATCCTTCAAGAAGCTTATGCTGCCATTCCCAATTCTGAAGAAATTTGGCTTGCTGCATTTAAACTTGAATTTGAGAACCATGAACCAGAGAGAGCTAGAATGCTTCTTGCCAAAGCCCGAGAAAAGGGAGGCACTGAAAGAGTGTGGATGAAATCAGCAATTGTTGAGAGAGAATTAGGGAACATTAATGCAGAGAGGAAGTTGCTTGATGATGGGTTGAAGCGCTTCCCTTCCTTTTATAAATTATGGTTGATGCTTGGACAGCTAGAGGAACGCCTTGGTCATTTGGAGAAAGCCAAGGAGGCCTATGATTCGGGTCTGAAGTACTGCTCCAGTTCTATTCCACTGTGGCTTTCTCTTGCTAATCTTGAAGAGAAGATGACTGGTCTGAGTAAAGCTCGTGCAATTCTGACGATGGCCAGGAAGAAGAATCCTCAGAACCCTGAATTGTGGCTTGCTGCTGTTCGAGCTGAATTAAGGCATGGAAATAAGAAGGAAGCTGATATCTTGATGGCAAAGGCCTTGCAGGAGTGTCCCAATAGTGGTATATTGTGGGCTGCGTCCATTGAGATGGTACCCCGTCCACAACGGAAGACGAAGAGTATGGATGCCCTCAAGAAATGTGATCATGATCCCCATGTCATTGCTGCTGTGTCTAAGTTATTTTGGCATGACAGGAAGGTTGACAAAGCTAGGACTTGGCTTAACAGGGCAGTGACACTAGCGCCAGATATTGGGGATTTCTGGGCTTTATACTACAAATTTGAACTTCAACATGGGACCGATGAGAACCAGAAAGATGTACTTAAAAGGTGCATAGCTGCAGAACCAAAGCATGGTGAGAAATGGCAACCTATTTCAAAGGCCGTGGAGAACTCCCACCAACCAACTGAAGCCATCTTGAAGAAAGTGGTGGTTGCTCTTGGGAAGGAAGAGAGTGCAGCTGAAAATAATAAACAGTATTTACAGATTCTGTTTCTGGGTTGGCGGTTGAGGAACAAGAAGACATTCAAGAGCTTTCTGCTGGTGGCCGCTGCGCTTTCAAACAAGGCAAGACAGGAACTGGAGTCGAAAGGGTACCTTACTGATCTTAAGAATATGAATACTACTAGTGATGCTGAGATTTCAGATAATGAAAATGCGAGGTTGCTGGCACAGACGAATCCGACGCACCCACGTGGTTGGATTGCTGCTGCCAGGCTGGAGGTGGTGGCTGGGAACATTCAGGCGTGTAGGCTTGCGAGCCCTGATGAAACAAAGGCCTTGATTTCGAAGGGAGTGAAATTGATTCCCAATTCGGACAAACTGTGGAGGCAGGCTGCGGAATTGGAGCATGATGATTTGAGTAGGAGCAGGGTGTTGAGGAAAGGTTTGGAACACATTCCCGATTCTGTTAGGCTGTGGGAGGCTGTCGTGGAGCTTGCCGGTGAGGAAGATAAGAGACTTTTGCTTCATAGGGCTATGAAGTGTTGTCCCTTGCACGTTGAGTTGTGGCTTCAACATGGTGCATTGGAAACTAATGAGAATATGTGGATGTCTTTACCAAGGCAAGAGAGAAGGTATTGTGTTGTCTATATCTGACCGCTACTGTCATGCCGGGGTTTATAACCTACAGACAGTCATGGAAAACATAGGTTGGCATGTCAATGGAGTGGAGCTTCGTCCTTTGAGCAAGGGAAATAACTGTCTTTTGCTTACGCAGATTACAGAATAGAGGGAGGAAGAAATGATGCAAGTATGCAAGCGGAACAGATTTATTTACTTGTATCCTATGTATGGCCTCTAAGTCGATTGTTTGAAATTGGCAATTTCAACCGTGTAGCGAGGTGCATGTGCAATTTTTTTTTTTTTTTTTTTTTTTT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G03430.1	1	EMB2770;STA1\|EMBRYO DEFECTIVE 2770;STABILIZED 1
Prunus persica	Prupe.3G157000.1.p	1	pre-mRNA splicing factor-related
Pyrus communis	PCP028292.1	1	-
Pyrus x bretschneideri	Pbr032609.1	1	-
Rosa multiflora	Rmu_sc0000356.1_g000010.1	1	-
Rubus occidentalis	Ro01_G23148	1	-
Fragaria vesca	mrna08122.1	1	pre-mRNA splicing factor-related
Solanum lycopersicum	Solyc07g054200.2.1	1	pre-mRNA splicing factor-related
Populus trichocarpa	Potri.013G135300.1	1	pre-mRNA splicing factor-related
Nicotiana benthamiana	Niben101Scf06117g01017.1	1	Pre-mRNA-processing factor 6
Oryza sativa	LOC_Os10g35550.1	1	"pre-mRNA-processing factor 6, putative, expressed"
Oryza sativa	LOC_Os01g15860.1	1	"pre-mRNA-processing factor 6, putative, expressed"
Zea mays	GRMZM2G049902_P01	1	-
Zea mays	GRMZM2G401561_P01	0.828	-

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	cellular component
GO:0005515	protein binding	molecular_function
GO:0006396	RNA processing	biological_process

KEGG

KO	Description	Enzyme
K12855	pre-mRNA-processing factor 6	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06424.8	PRP1_N	98	265	8.70E-54

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	6.90168
SRR5252888	dormant buds	no	dormant buds(0 month)	25.7998
SRR5252889	dormant buds	no	dormant buds(0 month)	21.7058
SRR5252886	dormant buds	no	dormant buds(1 months)	24.2218
SRR5252887	dormant buds	no	dormant buds(1 months)	22.223
SRR5252884	dormant buds	no	dormant buds(2 months)	24.4152
SRR5252882	dormant buds	no	dormant buds(3 months)	24.9079
SRR5252883	dormant buds	no	dormant buds(3 months)	15.6796
SRR5252880	dormant buds	no	dormant buds(4 months)	20.5333
SRR5252881	dormant buds	no	dormant buds(4 months)	23.3037
SRR5252878	bud break	no	bud break	19.2807
SRR5252879	bud break	no	bud break	18.1569
SRR3744766	flower	no	mature	13.8953
SRR3744767	flower	no	mature	15.532
SRR3744768	flower	no	mature	14.4791
SRR6308190	stigmas	no	open flowers	5.06685
SRR6308181	styles	no	open flowers	5.93723
SRR6308188	filaments	no	open flowers	5.75116
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	7.03332
SRR6308192	pollen	no	open flowers	13.2809
SRR6308191	petals	no	open flowers	5.97121
SRR6308194	sepals	no	open flowers	5.49655
SRR6308193	receptacles	no	open flowers	6.6341
SRR6308189	ovaries	no	open flowers	6.63851
SRR3384922	fruit	no	1 week after full bloom	4.01718
SRR3384921	fruit	no	2 week after full bloom	4.0073
SRR3384920	fruit	no	3 week after full bloom	4.12909
SRR3384919	fruit	no	4 week after full bloom	4.04009
SRR3384923	fruit	no	5 week after full bloom	3.46283
SRR3384918	fruit	no	6 week after full bloom	3.83648
SRR3384917	fruit	no	8 week after full bloom	4.1873
SRR3384916	fruit	no	10 week after full bloom	3.56331
SRR3384915	fruit	no	12 week after full bloom	3.09586
SRR3384914	fruit	no	14 week after full bloom	3.20008
SRR3384913	fruit	no	16 week after full bloom	2.79197
SRR3384912	fruit	no	18 week after full bloom	2.88213
SRR3384911	fruit	no	19 week after full bloom	3.53914
SRR3384910	fruit	no	20 week after full bloom	4.05
SRR768128	whole fruit	no	25 days post anthesis	9.17386
SRR768129	whole fruit	no	35 days post anthesis	4.51515
SRR768130	whole fruit	no	60 days post anthesis	6.51989
SRR768131	whole fruit	no	87 days post anthesis	8.85999
SRR7343308	immature fruit flesh	no	immature	8.13491
SRR7343309	immature fruit flesh	no	immature	8.45904
SRR6320494	ripe fruit flesh	no	mature	8.39386
SRR5405143	ripe fruit peel	no	mature	6.65724
SRR6320572	ripe fruit peel	no	mature	8.70467
SRR7403504	fruit	uninfected	mature	5.89395
SRR7403506	fruit	uninfected	mature	5.72847
SRR7403507	fruit	uninfected	mature	5.79853
SRR7403500	fruit	infected with penicillium expansum	mature	6.96537
SRR7403501	fruit	infected with penicillium expansum	mature	6.42877
SRR7403508	fruit	infected with penicillium expansum	mature	6.78508
SRR7403502	fruit	infected with penicillium expansum	mature	9.71888
SRR7403503	fruit	infected with penicillium expansum	mature	10.5936
SRR7403505	fruit	infected with penicillium expansum	mature	9.33431
SRR1613973	Central seeds	no	20DAPF	5.53206
SRR1613974	Central seeds	no	20DAPF	5.90988
SRR1613975	Central seeds	no	20DAPF	6.26687
SRR1613976	Lateral seeds	no	20DAPF	6.7773
SRR1613977	Lateral seeds	no	20DAPF	6.43923
SRR1613978	Lateral seeds	no	20DAPF	6.40559
SRR3744786	stem	no	mature	14.4194
SRR3744787	stem	no	mature	14.0257
SRR3744772	stem	no	mature	14.8268
SRX765691	seedling shoot apex	no	4-6 week old seedling	10.2612
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.5555
SRR1089478	leaf	Virus-free	plantlets	12.588
SRR1089477	leaf	ASGV-infected	plantlets	14.5139
SRR767660	leaf	uninfected	fully developed	10.0752
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	7.47559
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	9.37801
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.99423
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	7.7668
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	7.91185
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	15.1428
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.47964
SRR6308182	young leaf	no	immature leaves	7.60945
SRR3744769	leaf	no	mature	15.5484
SRR3744770	leaf	no	mature	16.2862
SRR3744771	leaf	no	mature	16.7825
SRR5405145	leaf	no	mature	14.9887
SRR6320561	leaf	no	mature	9.20563