Gene detail

Detail information of MD09G1274700 Annotation

Gene ID	Annotation
MD09G1274700	SGNH hydrolase-type esterase superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0089	cysteamine dioxygenase [EC:1.13.11.19] extracellular region oxidoreductase activity growth factor activity cysteamine dioxygenase activity extracellular matrix

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1274700	mRNA	Chr09	35201321	35203572	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G37690.1	1	SGNH hydrolase-type esterase superfamily protein
Prunus persica	Prupe.3G016500.1.p	1	SGNH hydrolase-type esterase superfamily protein
Pyrus x bretschneideri	Pbr008486.1	1	-
Rosa multiflora	Rmu_sc0014425.1_g000007.1	1	-
Rosa multiflora	Rmu_sc0002489.1_g000011.1	1	-
Rubus occidentalis	Ro01_G18286	1	-
Fragaria vesca	mrna30527.1	1	SGNH hydrolase-type esterase superfamily protein
Vitis vinifera	GSVIVT01030799001	1	SGNH hydrolase-type esterase superfamily protein
Solanum lycopersicum	Solyc11g011110.1.1	1	SGNH hydrolase-type esterase superfamily protein
Populus trichocarpa	Potri.017G130100.1	1	SGNH hydrolase-type esterase superfamily protein
Nicotiana benthamiana	Niben101Scf02854g08003.1	1	GDSL esterase/lipase
Oryza sativa	LOC_Os02g50000.1	1	"GDSL-like lipase/acylhydrolase, putative, expressed"
Oryza sativa	LOC_Os06g14630.1	1	"GDSL-like lipase/acylhydrolase, putative, expressed"
Zea mays	GRMZM2G063464_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0006629	lipid metabolic process	biological_process
GO:0016787	hydrolase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.159046
SRR5252888	dormant buds	no	dormant buds(0 month)	0.192332
SRR5252889	dormant buds	no	dormant buds(0 month)	0.965493
SRR5252886	dormant buds	no	dormant buds(1 months)	0.325759
SRR5252887	dormant buds	no	dormant buds(1 months)	0.432772
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0.075533
SRR5252880	dormant buds	no	dormant buds(4 months)	0.276717
SRR5252881	dormant buds	no	dormant buds(4 months)	0.153572
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.534854
SRR3744766	flower	no	mature	1.60312
SRR3744767	flower	no	mature	2.01718
SRR3744768	flower	no	mature	2.11004
SRR6308190	stigmas	no	open flowers	22.5814
SRR6308181	styles	no	open flowers	16.4856
SRR6308188	filaments	no	open flowers	0.283317
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	57.2159
SRR6308192	pollen	no	open flowers	1.66347
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.11724
SRR6308193	receptacles	no	open flowers	0.373974
SRR6308189	ovaries	no	open flowers	7.97564
SRR3384922	fruit	no	1 week after full bloom	1.62242
SRR3384921	fruit	no	2 week after full bloom	1.0537
SRR3384920	fruit	no	3 week after full bloom	0.0618536
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0.434745
SRR3384918	fruit	no	6 week after full bloom	0.12099
SRR3384917	fruit	no	8 week after full bloom	0.0873393
SRR3384916	fruit	no	10 week after full bloom	0.340383
SRR3384915	fruit	no	12 week after full bloom	0.201369
SRR3384914	fruit	no	14 week after full bloom	0.195299
SRR3384913	fruit	no	16 week after full bloom	0.0766765
SRR3384912	fruit	no	18 week after full bloom	0.215871
SRR3384911	fruit	no	19 week after full bloom	0.13803
SRR3384910	fruit	no	20 week after full bloom	0.108074
SRR768128	whole fruit	no	25 days post anthesis	0.702292
SRR768129	whole fruit	no	35 days post anthesis	0.685529
SRR768130	whole fruit	no	60 days post anthesis	1.00569
SRR768131	whole fruit	no	87 days post anthesis	1.08141
SRR7343308	immature fruit flesh	no	immature	0.767093
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0.316483
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.0386682
SRR1613974	Central seeds	no	20DAPF	0.0929808
SRR1613975	Central seeds	no	20DAPF	0.0360674
SRR1613976	Lateral seeds	no	20DAPF	0.113815
SRR1613977	Lateral seeds	no	20DAPF	0.0660338
SRR1613978	Lateral seeds	no	20DAPF	0.0505461
SRR3744786	stem	no	mature	0.239924
SRR3744787	stem	no	mature	0.118715
SRR3744772	stem	no	mature	0.236806
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.12771
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0873963
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.193193
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0.0306242
SRR3744770	leaf	no	mature	0.0645871
SRR3744771	leaf	no	mature	0.031826
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0