Gene detail

Detail information of MD09G1287700 Annotation

Gene ID	Annotation
MD09G1287700	HCO3 -transporter family

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1287700	mRNA	Chr09	36758275	36763931	-

Sequences

CDS:

MD09G1287700

TCTTTCTCTTCCAAATTACCACCACTATTGACTCTGCTTTGCTAGCTCTTTCTAATTTCCCCATTTGGTCCACCCTCCTTGCTTTCTCTCCACACTGCATTGGTTGAATCTGGTAAAAAATCCCAGACCATGTAAACTTAGGTGGTTACTTTGATAGCCAGTTCAAGTTATGGCAATCTCTTGCCCCCTGCTTGCTGTAAACTGTTAGCAATTTTTCAGTGGAGGGAGGCTATCTCTATTTTACTCAAGGAAATCGGTAATACCGATCAGACATCAGAGACAGAAGCATGGAAGAGACATTTGTGCCTTTGCGGGGAATCAAGAATGATCTCAGAGGAAGATTGAAGTGCTACAAGGAAGACTGGACTGGGGGCTTTAAAGCTGGATTCAGGATTTTGGCTCCTACAACCTACATATTTTTTGCTTCTGCAATCCCAGTCATTTCATTTGGTGAACAATTGGATCGAAGTACTGATGGAGTTTTGACAGCAGTGCAAACCTTAGTATCGACGGCAGTTTGTGGGATCATACATTCCATCGTCGGAGGTCAACCCTTGCTGATATTGGGTGTGGCCGAGCCTACTGTAATCATGTACACCTTCATGTTCAATTTTGCCAAAGAACGTAAGGACTTGGGTCCAAAGCTCTTTCTAGCATGGTCCGCATGGGTATGTGTATGGACAGCTGGTTTACTGTTCTTATTGGCAATATTAGGCGCTTGTTCCATAATAAATAGGTTTACAAGAGTGGCTGGGGAGTTGTTTGGTCTACTTATTGCTATGCTCTTCATGCAGCAAGCCATTAAAGGACTTGTGGATGAGTTTCGCTTACCAGAAAGAGAAGACACTAGTTTACTACAATTTATACCTTCATGGAGGTTTGCAAATGGAATGTTTGCTTTGGTGTTGTCATTTGGCCTTCTTCTCACAGCATTAAAAAGCAGGAAAGCAAGGTCATGGCGCTATGGCACTGGTTGGCTAAGAAGCTTTGTAGCAGACTATGGTGTGCCACTTATGGTTCTGGTGTGGACTGGTGTGTCTTACATTCCAACTAGTAGTGTTCCACACGGCATCCCAAGGCGCCTTTTTAGCCCAAATCCATGGTCACCTGGTGCATATGAAAATTGGACTGTCATTAAGGACATGCTCAATGTTCCAGTCCTCTATATCATTGGAGCTTTCATTCCAGCAACGATGATCGCGGTGCTTTACTATTTTGATCACAGTGTAGCATCCCAACTATCTCAGCAGAAAGAGTTCAACTTAAGAAAGCCATCCTCTTACCATTATGACTTGCTTCTTTTGGGGTTTCTGACTTTAATGTGTGGTCTGCTTGGAATTCCTCCATCAAATGGAGTCATCCCACAGTCTCCAATGCATACAAAAAGTTTAGCTACTCTTAAACACCAGTTGCTTCGTAATCGTCTTGTAGCAACAGCACGCACAAGTATGAGAAATAATGCTAGCTTGGGACAACTGTATGGAAATATGCAAGATGCCTATCAACAAATGCAGACTCCTTTGGTTTACCAGGAGGCCTCATCTCGAGGACTGAATGAATTAAAAGAATCAACCATCCAGGCAGCTTCGAGTATGGGAAATTATATTGATGCACCAGTTGATCAGACAGTATTTGATATTGAGAAAGAGATTGATGATCTATTGCCGGTTGAGGTGAAGGAGCAGCGTCTCAGTAACCTGCTTCAAGCGGTATTGGTGGGGGGATGTGTTGCAGCCATGCCTATCCTCAAAAGAATCCCAACTTCAGTCCTTTGGGGATACTTTGCCTTCATGGCCATTGAAAGCTTACCCGGTAACCAATTTTGGGAAAGGATTTTATTGCTCTTTACAGCTCCAAGTAGAAGATTCAAAGTCCTCGAGGATAATCACGCCACTTTTGTAGAAACTGTGCCTTTCAAGTCAATCGCGATGTTCACAGTTTTCCAAACGATGTACCTGCTTGCATGTTTTGGGCTTACTTGGGTTCCAATTGCTGGGGTTATGTTTCCAATGATGATCATGCTCTTGGTTCCTGTGAGGCAATACATACTCCCCAAGTTTTTCAAAGGAGCACACCTTCAGGATTTGGATGCAGCAGAGTACGAAGAGGCTCCGGCTTTAACATATAACCTTGCAACGGAGACAGAGTTGGGAGCTGGAGCTTCCTGCGCAGGGGATGCAGAAATATTAGACGAAGTTATGACCAGAAGCCGAGGTGAGTTTAGGCATGTCAGCAGTCCAAAGATCACAAGCTCTACTTCAACACCAGCAAATGCCCCTGAAATCCTTGGGAGTCCACACAAGACCTTCAGTCCTCGCGTAAGTGAGCTAAGAGGAGAGCGAAGTCCTCTTTCTGGCGGAAGAGGGTCGCACAGTCCGGGGACCCCTGGCTCTTCTTCTATTCTTGGGAAGAGTCCTAGTAACTGCTAAGGACGGAGCATCATGTTAGCTGTATATTTTTCTTCGCCTTCAGTTAAGAACATGTAGAGGGCTTTCACCGTTTTTAGTTCCACTGGTTCGCTTTGTTTTGTTTTGTTTTGTTTTGTTTTGCATTGCTTTGCTTCTTTGTAAAAATTACATTTTCTTTCTTTTGTCTTCTAAAAGTGTTCCTTTGTAATCATAGCACATTAGCGTTGTGTTTATTTCTGGTAAACATTATTTATACAAGTGAAGGTATTCAATCCCATCACGATCGACTCCATGTACGTACTCATTGTATCCTACTTGTACTATTACTTTAGTCTAAAGAAGGGGGAGAAATTGCACTGTACAAATAAACAGTGACTTTGGGT

Protein:

Gene family

Gene family	Subfamily
Transporter family	AE

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G62270.1	1	BOR2\|REQUIRES HIGH BORON 2
Prunus persica	Prupe.3G005600.1.p	1	HCO3- transporter family
Pyrus communis	PCP005765.1	1	-
Rosa multiflora	Rmu_sc0013001.1_g000011.1	1	-
Rubus occidentalis	Ro01_G15735	1	-
Fragaria vesca	mrna24532.1	1	HCO3- transporter family
Vitis vinifera	GSVIVT01028186001	1	HCO3- transporter family
Solanum lycopersicum	Solyc01g079150.2.1	1	HCO3- transporter family
Populus trichocarpa	Potri.014G116000.1	1	HCO3- transporter family
Nicotiana benthamiana	Niben101Scf06412g01004.1	1	Boron transporter 1
Oryza sativa	LOC_Os12g37840.1	1	"boron transporter protein, putative, expressed"
Zea mays	GRMZM2G166159_P01	1	Boron transporter 1;
Zea mays	GRMZM2G082203_P01	0.755	-

Gene Ontology

GO term	Description	Category
GO:0006820	anion transport	biological_process
GO:0016021	integral component of membrane	cellular component
GO:0005452	inorganic anion exchanger activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.44107
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.0331677
SRR5252886	dormant buds	no	dormant buds(1 months)	0.0727406
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0.0337324
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.0615443
SRR5252879	bud break	no	bud break	0.511845
SRR3744766	flower	no	mature	0.038502
SRR3744767	flower	no	mature	0.0336273
SRR3744768	flower	no	mature	0.0784933
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0.0426696
SRR6308188	filaments	no	open flowers	0.127874
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.0661025
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.159104
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0.0343943
SRR3384922	fruit	no	1 week after full bloom	0.144892
SRR3384921	fruit	no	2 week after full bloom	0.0627346
SRR3384920	fruit	no	3 week after full bloom	0.0276194
SRR3384919	fruit	no	4 week after full bloom	0.0510326
SRR3384923	fruit	no	5 week after full bloom	0.0727973
SRR3384918	fruit	no	6 week after full bloom	0.0540256
SRR3384917	fruit	no	8 week after full bloom	0.116999
SRR3384916	fruit	no	10 week after full bloom	0.126659
SRR3384915	fruit	no	12 week after full bloom	0.0599447
SRR3384914	fruit	no	14 week after full bloom	0.26162
SRR3384913	fruit	no	16 week after full bloom	0.102715
SRR3384912	fruit	no	18 week after full bloom	0.0642617
SRR3384911	fruit	no	19 week after full bloom	0.215721
SRR3384910	fruit	no	20 week after full bloom	0.361936
SRR768128	whole fruit	no	25 days post anthesis	0.139789
SRR768129	whole fruit	no	35 days post anthesis	0.115132
SRR768130	whole fruit	no	60 days post anthesis	0.321716
SRR768131	whole fruit	no	87 days post anthesis	0.678044
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.112789
SRR7403506	fruit	uninfected	mature	0.153186
SRR7403507	fruit	uninfected	mature	0.121255
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.0867685
SRR1613974	Central seeds	no	20DAPF	0.0715344
SRR1613975	Central seeds	no	20DAPF	0.0485596
SRR1613976	Lateral seeds	no	20DAPF	0.063848
SRR1613977	Lateral seeds	no	20DAPF	0.0839657
SRR1613978	Lateral seeds	no	20DAPF	0.10586
SRR3744786	stem	no	mature	0.0396092
SRR3744787	stem	no	mature	0.0130555
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0810014
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.101339
SRR1089478	leaf	Virus-free	plantlets	0.111781
SRR1089477	leaf	ASGV-infected	plantlets	0.520244
SRR767660	leaf	uninfected	fully developed	0.510479
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.247133
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.17223
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.216925
SRR6308182	young leaf	no	immature leaves	0.177679
SRR3744769	leaf	no	mature	0.459528
SRR3744770	leaf	no	mature	0.382757
SRR3744771	leaf	no	mature	0.474042
SRR5405145	leaf	no	mature	0.198606
SRR6320561	leaf	no	mature	0.587562