Gene detail

Detail information of MD10G1009700 Annotation

Gene ID	Annotation
MD10G1009700	ATP phosphoribosyl transferase 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0731	ATP phosphoribosyltransferase [EC:2.4.2.17] ATP phosphoribosyltransferase activity threonine catabolic process histidine biosynthetic process petal morphogenesis triglyceride lipase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1009700	mRNA	Chr10	1344170	1348726	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G09795.1	1	ATATP-PRT2;ATP-PRT2;HISN1B\|ATP phosphoribosyl transferase 2;
Prunus persica	Prupe.8G013600.1.p	1	ATP phosphoribosyl transferase 2
Pyrus communis	PCP003640.1	1	-
Pyrus x bretschneideri	Pbr035206.1	1	-
Pyrus x bretschneideri	Pbr039351.1	1	-
Rosa multiflora	Rmu_sc0005177.1_g000024.1	1	-
Rubus occidentalis	Ro07_G13250	1	-
Fragaria vesca	mrna14208.1	1	ATP phosphoribosyl transferase 2
Vitis vinifera	GSVIVT01023275001	1	ATP phosphoribosyl transferase 2
Solanum lycopersicum	Solyc01g103750.2.1	1	ATP phosphoribosyl transferase 2
Populus trichocarpa	Potri.019G057200.1	1	ATP phosphoribosyl transferase 2
Nicotiana benthamiana	Niben101Scf01970g01025.1	1	ATP phosphoribosyltransferase
Nicotiana benthamiana	Niben101Scf03053g00001.1	0.81	ATP phosphoribosyltransferase
Oryza sativa	LOC_Os03g04169.1	1	"ATP phosphoribosyltransferase, putative, expressed"
Zea mays	GRMZM2G068862_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0000105	histidine biosynthetic process	biological_process
GO:0005737	cytoplasm	cellular component
GO:0000287	magnesium ion binding	molecular_function
GO:0003879	ATP phosphoribosyltransferase activity	molecular_function

KEGG

KO	Description	Enzyme
K00765	ATP phosphoribosyltransferase	EC:2.4.2.17

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08029.7	HisG_C	279	364	3.70E-17

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	15.6929
SRR5252888	dormant buds	no	dormant buds(0 month)	8.57653
SRR5252889	dormant buds	no	dormant buds(0 month)	9.36444
SRR5252886	dormant buds	no	dormant buds(1 months)	9.01636
SRR5252887	dormant buds	no	dormant buds(1 months)	9.05025
SRR5252884	dormant buds	no	dormant buds(2 months)	5.73879
SRR5252882	dormant buds	no	dormant buds(3 months)	5.54253
SRR5252883	dormant buds	no	dormant buds(3 months)	6.96868
SRR5252880	dormant buds	no	dormant buds(4 months)	7.02073
SRR5252881	dormant buds	no	dormant buds(4 months)	6.31682
SRR5252878	bud break	no	bud break	8.58213
SRR5252879	bud break	no	bud break	9.51666
SRR3744766	flower	no	mature	6.72765
SRR3744767	flower	no	mature	6.4318
SRR3744768	flower	no	mature	7.79311
SRR6308190	stigmas	no	open flowers	10.0797
SRR6308181	styles	no	open flowers	11.001
SRR6308188	filaments	no	open flowers	13.1272
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	10.723
SRR6308192	pollen	no	open flowers	7.06146
SRR6308191	petals	no	open flowers	16.6439
SRR6308194	sepals	no	open flowers	21.2053
SRR6308193	receptacles	no	open flowers	13.2257
SRR6308189	ovaries	no	open flowers	11.9234
SRR3384922	fruit	no	1 week after full bloom	20.2063
SRR3384921	fruit	no	2 week after full bloom	18.2537
SRR3384920	fruit	no	3 week after full bloom	24.6797
SRR3384919	fruit	no	4 week after full bloom	22.8443
SRR3384923	fruit	no	5 week after full bloom	25.067
SRR3384918	fruit	no	6 week after full bloom	25.9049
SRR3384917	fruit	no	8 week after full bloom	22.0909
SRR3384916	fruit	no	10 week after full bloom	27.782
SRR3384915	fruit	no	12 week after full bloom	23.7375
SRR3384914	fruit	no	14 week after full bloom	23.1722
SRR3384913	fruit	no	16 week after full bloom	23.2845
SRR3384912	fruit	no	18 week after full bloom	20.6896
SRR3384911	fruit	no	19 week after full bloom	17.8806
SRR3384910	fruit	no	20 week after full bloom	15.1216
SRR768128	whole fruit	no	25 days post anthesis	13.6347
SRR768129	whole fruit	no	35 days post anthesis	18.4688
SRR768130	whole fruit	no	60 days post anthesis	17.5835
SRR768131	whole fruit	no	87 days post anthesis	15.4828
SRR7343308	immature fruit flesh	no	immature	10.0206
SRR7343309	immature fruit flesh	no	immature	14.4099
SRR6320494	ripe fruit flesh	no	mature	12.6942
SRR5405143	ripe fruit peel	no	mature	12.6641
SRR6320572	ripe fruit peel	no	mature	23.9886
SRR7403504	fruit	uninfected	mature	13.2715
SRR7403506	fruit	uninfected	mature	13.9609
SRR7403507	fruit	uninfected	mature	12.7883
SRR7403500	fruit	infected with penicillium expansum	mature	51.1292
SRR7403501	fruit	infected with penicillium expansum	mature	51.3269
SRR7403508	fruit	infected with penicillium expansum	mature	52.8588
SRR7403502	fruit	infected with penicillium expansum	mature	50.581
SRR7403503	fruit	infected with penicillium expansum	mature	55.0395
SRR7403505	fruit	infected with penicillium expansum	mature	55.123
SRR1613973	Central seeds	no	20DAPF	14.8653
SRR1613974	Central seeds	no	20DAPF	14.8383
SRR1613975	Central seeds	no	20DAPF	14.4629
SRR1613976	Lateral seeds	no	20DAPF	13.7006
SRR1613977	Lateral seeds	no	20DAPF	13.6678
SRR1613978	Lateral seeds	no	20DAPF	13.6034
SRR3744786	stem	no	mature	8.22815
SRR3744787	stem	no	mature	8.32132
SRR3744772	stem	no	mature	9.43026
SRX765691	seedling shoot apex	no	4-6 week old seedling	14.1743
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	17.2805
SRR1089478	leaf	Virus-free	plantlets	30.9889
SRR1089477	leaf	ASGV-infected	plantlets	23.6657
SRR767660	leaf	uninfected	fully developed	30.9485
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	27.295
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	23.3781
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	12.572
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	10.972
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	31.5386
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	21.5029
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	21.9634
SRR6308182	young leaf	no	immature leaves	18.8773
SRR3744769	leaf	no	mature	8.85592
SRR3744770	leaf	no	mature	8.99717
SRR3744771	leaf	no	mature	8.78645
SRR5405145	leaf	no	mature	23.0533
SRR6320561	leaf	no	mature	29.3029