Gene detail

Detail information of MD10G1010900 Annotation

Gene ID	Annotation
MD10G1010900	myb domain protein 52

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1010900	mRNA	Chr10	1505356	1507152	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G69560.1	1	ATMYB105;LOF2;MYB105\|MYB DOMAIN PROTEIN 105;LATERAL ORGAN FUSION 2
Prunus persica	Prupe.8G016100.1.p	1	myb domain protein 52
Pyrus communis	PCP012159.1	1	-
Pyrus x bretschneideri	Pbr039365.1	1	-
Rosa multiflora	Rmu_sc0001846.1_g000012.1	1	-
Rubus occidentalis	Ro02_G16815	1	-
Fragaria vesca	mrna01013.1	1	myb domain protein 52
Vitis vinifera	GSVIVT01010006001	1	myb domain protein 52
Populus trichocarpa	Potri.005G186400.1	1	myb domain protein 52
Populus trichocarpa	Potri.002G073500.1	0.609	myb domain protein 52
Nicotiana benthamiana	Niben101Scf07474g04002.1	1	Cyclin-D-binding Myb-like transcription factor 1

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0003682	chromatin binding	molecular_function

KEGG

KO	Description	Enzyme
K09422	"transcription factor MYB, plant"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.2	Myb_DNA-bind_6	18	78	7.20E-18

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0851897
SRR5252888	dormant buds	no	dormant buds(0 month)	4.12169
SRR5252889	dormant buds	no	dormant buds(0 month)	1.85685
SRR5252886	dormant buds	no	dormant buds(1 months)	1.59982
SRR5252887	dormant buds	no	dormant buds(1 months)	1.46844
SRR5252884	dormant buds	no	dormant buds(2 months)	0.493704
SRR5252882	dormant buds	no	dormant buds(3 months)	1.2379
SRR5252883	dormant buds	no	dormant buds(3 months)	1.3489
SRR5252880	dormant buds	no	dormant buds(4 months)	0.370629
SRR5252881	dormant buds	no	dormant buds(4 months)	0.411383
SRR5252878	bud break	no	bud break	1.47663
SRR5252879	bud break	no	bud break	0.204678
SRR3744766	flower	no	mature	0.181685
SRR3744767	flower	no	mature	0.431748
SRR3744768	flower	no	mature	0.160069
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0.0843455
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.96021
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.251075
SRR6308189	ovaries	no	open flowers	0.272022
SRR3384922	fruit	no	1 week after full bloom	0.46357
SRR3384921	fruit	no	2 week after full bloom	0.188169
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0.0599338
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	1.67316
SRR768129	whole fruit	no	35 days post anthesis	1.0718
SRR768130	whole fruit	no	60 days post anthesis	0.128355
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0.0403416
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	20.0104
SRR1613974	Central seeds	no	20DAPF	20.2771
SRR1613975	Central seeds	no	20DAPF	16.9722
SRR1613976	Lateral seeds	no	20DAPF	20.0904
SRR1613977	Lateral seeds	no	20DAPF	17.863
SRR1613978	Lateral seeds	no	20DAPF	21.9557
SRR3744786	stem	no	mature	0.640911
SRR3744787	stem	no	mature	0.660575
SRR3744772	stem	no	mature	1.10685
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.09148
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.580792
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.0863355
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0.281134
SRR3744769	leaf	no	mature	0.0818463
SRR3744770	leaf	no	mature	0.0862173
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0.291522