Gene detail

Detail information of MD10G1013800 Annotation

Gene ID	Annotation
MD10G1013800	alcohol dehydrogenase 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1013800	mRNA	Chr10	1853619	1856065	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Oryza sativa	LOC_Os11g10480.2	1	"dehydrogenase, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0055114	oxidation-reduction process	biological_process
GO:0008270	zinc ion binding	molecular_function
GO:0016491	oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
K18857	alcohol dehydrogenase class-P	EC:1.1.1.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.8	ADH_N	36	154	8.50E-23

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.4733
SRR5252888	dormant buds	no	dormant buds(0 month)	0.34508
SRR5252889	dormant buds	no	dormant buds(0 month)	1.33252
SRR5252886	dormant buds	no	dormant buds(1 months)	0.584475
SRR5252887	dormant buds	no	dormant buds(1 months)	0.698829
SRR5252884	dormant buds	no	dormant buds(2 months)	1.36404
SRR5252882	dormant buds	no	dormant buds(3 months)	0.99495
SRR5252883	dormant buds	no	dormant buds(3 months)	1.82953
SRR5252880	dormant buds	no	dormant buds(4 months)	0.496484
SRR5252881	dormant buds	no	dormant buds(4 months)	1.51546
SRR5252878	bud break	no	bud break	0.494512
SRR5252879	bud break	no	bud break	0.548361
SRR3744766	flower	no	mature	0.625899
SRR3744767	flower	no	mature	0.844815
SRR3744768	flower	no	mature	0.666367
SRR6308190	stigmas	no	open flowers	1.1827
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.421703
SRR6308193	receptacles	no	open flowers	0.252225
SRR6308189	ovaries	no	open flowers	0.136633
SRR3384922	fruit	no	1 week after full bloom	1.39722
SRR3384921	fruit	no	2 week after full bloom	1.76447
SRR3384920	fruit	no	3 week after full bloom	0.554872
SRR3384919	fruit	no	4 week after full bloom	0.871454
SRR3384923	fruit	no	5 week after full bloom	1.65749
SRR3384918	fruit	no	6 week after full bloom	1.41098
SRR3384917	fruit	no	8 week after full bloom	5.40613
SRR3384916	fruit	no	10 week after full bloom	5.2927
SRR3384915	fruit	no	12 week after full bloom	6.32249
SRR3384914	fruit	no	14 week after full bloom	10.3366
SRR3384913	fruit	no	16 week after full bloom	12.3812
SRR3384912	fruit	no	18 week after full bloom	8.77888
SRR3384911	fruit	no	19 week after full bloom	19.5022
SRR3384910	fruit	no	20 week after full bloom	10.2282
SRR768128	whole fruit	no	25 days post anthesis	0.560315
SRR768129	whole fruit	no	35 days post anthesis	0.999877
SRR768130	whole fruit	no	60 days post anthesis	1.80534
SRR768131	whole fruit	no	87 days post anthesis	3.39724
SRR7343308	immature fruit flesh	no	immature	0.343995
SRR7343309	immature fruit flesh	no	immature	2.05986
SRR6320494	ripe fruit flesh	no	mature	0.657397
SRR5405143	ripe fruit peel	no	mature	3.84287
SRR6320572	ripe fruit peel	no	mature	5.97809
SRR7403504	fruit	uninfected	mature	3.55455
SRR7403506	fruit	uninfected	mature	4.02794
SRR7403507	fruit	uninfected	mature	3.52608
SRR7403500	fruit	infected with penicillium expansum	mature	0.167035
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.178692
SRR7403502	fruit	infected with penicillium expansum	mature	0.138155
SRR7403503	fruit	infected with penicillium expansum	mature	0.308615
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0.0596348
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0.0510979
SRR1613977	Lateral seeds	no	20DAPF	0.0790567
SRR1613978	Lateral seeds	no	20DAPF	0.0302573
SRR3744786	stem	no	mature	7.13743
SRR3744787	stem	no	mature	5.65507
SRR3744772	stem	no	mature	7.09661
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.58585
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.190749
SRR1089478	leaf	Virus-free	plantlets	33.21
SRR1089477	leaf	ASGV-infected	plantlets	23.332
SRR767660	leaf	uninfected	fully developed	46.951
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	12.4829
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	24.5809
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	32.2317
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	14.1912
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	19.1714
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	31.5383
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	37.5973
SRR6308182	young leaf	no	immature leaves	0.635445
SRR3744769	leaf	no	mature	14.3366
SRR3744770	leaf	no	mature	12.9659
SRR3744771	leaf	no	mature	12.6595
SRR5405145	leaf	no	mature	38.638
SRR6320561	leaf	no	mature	57.4016