Gene detail

Detail information of MD10G1025200 Annotation

Gene ID	Annotation
MD10G1025200	Duplicated homeodomain-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1025200	mRNA	Chr10	3133957	3136398	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	Trihelix

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP001856.1	1	-
Pyrus x bretschneideri	Pbr036349.1	1	-
Rosa multiflora	Rmu_sc0006527.1_g000008.1	1	-
Rosa multiflora	Rmu_sc0033082.1_g000001.1	1	-
Rubus occidentalis	Ro02_G17701	1	-
Fragaria vesca	mrna08173.1	1	Duplicated homeodomain-like superfamily protein

Gene Ontology

GO term	Description	Category
GO:0003682	chromatin binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.2	Myb_DNA-bind_4	64	149	2.60E-18
PF13837.2	Myb_DNA-bind_4	407	492	9.80E-22

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.693241
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0674016
SRR5252884	dormant buds	no	dormant buds(2 months)	0.10764
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0.215485
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.107315
SRR5252879	bud break	no	bud break	0
SRR3744766	flower	no	mature	0.157984
SRR3744767	flower	no	mature	0.0592409
SRR3744768	flower	no	mature	0.119047
SRR6308190	stigmas	no	open flowers	0.257322
SRR6308181	styles	no	open flowers	0.516406
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.114296
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.0946855
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0.356859
SRR3384922	fruit	no	1 week after full bloom	0.101067
SRR3384921	fruit	no	2 week after full bloom	0.109399
SRR3384920	fruit	no	3 week after full bloom	0.192655
SRR3384919	fruit	no	4 week after full bloom	0.0889926
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0.047106
SRR3384917	fruit	no	8 week after full bloom	0.204027
SRR3384916	fruit	no	10 week after full bloom	0.220873
SRR3384915	fruit	no	12 week after full bloom	0.156801
SRR3384914	fruit	no	14 week after full bloom	0.0506915
SRR3384913	fruit	no	16 week after full bloom	0.0597061
SRR3384912	fruit	no	18 week after full bloom	0.112062
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.30417
SRR768129	whole fruit	no	35 days post anthesis	0.200414
SRR768130	whole fruit	no	60 days post anthesis	0.112004
SRR768131	whole fruit	no	87 days post anthesis	0.590147
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.166599
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0.0670014
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	4.07303
SRR1613974	Central seeds	no	20DAPF	4.61196
SRR1613975	Central seeds	no	20DAPF	4.60112
SRR1613976	Lateral seeds	no	20DAPF	2.50869
SRR1613977	Lateral seeds	no	20DAPF	3.29744
SRR1613978	Lateral seeds	no	20DAPF	3.41799
SRR3744786	stem	no	mature	0.0464405
SRR3744787	stem	no	mature	0.0459432
SRR3744772	stem	no	mature	0.137469
SRX765691	seedling shoot apex	no	4-6 week old seedling	0
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0488001
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.35653
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.596576
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.754021
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0.0474692
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0.0245925
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0