Gene detail

Detail information of MD10G1036500 Annotation

Gene ID	Annotation
MD10G1036500	S phase kinase-associated protein 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1036500	mRNA	Chr10	4839883	4841839	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	SKP1

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP014216.1	1	-
Oryza sativa	LOC_Os02g01160.1	1	"skp1 family, tetramerisation domain containing protein"
Oryza sativa	LOC_Os02g13180.1	1	"SKP1, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0006511	ubiquitin-dependent protein catabolic process	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03931.11	Skp1_POZ	6	64	2.70E-26
PF01466.15	Skp1	80	153	2.30E-38

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	30.9519
SRR5252888	dormant buds	no	dormant buds(0 month)	22.285
SRR5252889	dormant buds	no	dormant buds(0 month)	34.8272
SRR5252886	dormant buds	no	dormant buds(1 months)	20.8309
SRR5252887	dormant buds	no	dormant buds(1 months)	26.1128
SRR5252884	dormant buds	no	dormant buds(2 months)	37.6226
SRR5252882	dormant buds	no	dormant buds(3 months)	27.8834
SRR5252883	dormant buds	no	dormant buds(3 months)	41.6124
SRR5252880	dormant buds	no	dormant buds(4 months)	36.1459
SRR5252881	dormant buds	no	dormant buds(4 months)	32.3985
SRR5252878	bud break	no	bud break	31.6339
SRR5252879	bud break	no	bud break	17.2887
SRR3744766	flower	no	mature	20.8873
SRR3744767	flower	no	mature	20.3224
SRR3744768	flower	no	mature	19.094
SRR6308190	stigmas	no	open flowers	26.7861
SRR6308181	styles	no	open flowers	27.0181
SRR6308188	filaments	no	open flowers	34.624
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	20.2151
SRR6308192	pollen	no	open flowers	36.3099
SRR6308191	petals	no	open flowers	30.4762
SRR6308194	sepals	no	open flowers	23.0183
SRR6308193	receptacles	no	open flowers	29.2667
SRR6308189	ovaries	no	open flowers	23.526
SRR3384922	fruit	no	1 week after full bloom	54.8364
SRR3384921	fruit	no	2 week after full bloom	56.3623
SRR3384920	fruit	no	3 week after full bloom	68.8301
SRR3384919	fruit	no	4 week after full bloom	75.4571
SRR3384923	fruit	no	5 week after full bloom	82.4517
SRR3384918	fruit	no	6 week after full bloom	76.7746
SRR3384917	fruit	no	8 week after full bloom	99.3862
SRR3384916	fruit	no	10 week after full bloom	83.5314
SRR3384915	fruit	no	12 week after full bloom	100.228
SRR3384914	fruit	no	14 week after full bloom	83.828
SRR3384913	fruit	no	16 week after full bloom	100.16
SRR3384912	fruit	no	18 week after full bloom	86.6802
SRR3384911	fruit	no	19 week after full bloom	117.161
SRR3384910	fruit	no	20 week after full bloom	95.1003
SRR768128	whole fruit	no	25 days post anthesis	46.8907
SRR768129	whole fruit	no	35 days post anthesis	64.3194
SRR768130	whole fruit	no	60 days post anthesis	63.5723
SRR768131	whole fruit	no	87 days post anthesis	46.5518
SRR7343308	immature fruit flesh	no	immature	30.6119
SRR7343309	immature fruit flesh	no	immature	36.8394
SRR6320494	ripe fruit flesh	no	mature	50.7572
SRR5405143	ripe fruit peel	no	mature	43.1597
SRR6320572	ripe fruit peel	no	mature	129.764
SRR7403504	fruit	uninfected	mature	60.6324
SRR7403506	fruit	uninfected	mature	57.7732
SRR7403507	fruit	uninfected	mature	58.5286
SRR7403500	fruit	infected with penicillium expansum	mature	61.8288
SRR7403501	fruit	infected with penicillium expansum	mature	74.2471
SRR7403508	fruit	infected with penicillium expansum	mature	69.7337
SRR7403502	fruit	infected with penicillium expansum	mature	48.0266
SRR7403503	fruit	infected with penicillium expansum	mature	41.0534
SRR7403505	fruit	infected with penicillium expansum	mature	41.1243
SRR1613973	Central seeds	no	20DAPF	53.8471
SRR1613974	Central seeds	no	20DAPF	50.5153
SRR1613975	Central seeds	no	20DAPF	59.2857
SRR1613976	Lateral seeds	no	20DAPF	50.9039
SRR1613977	Lateral seeds	no	20DAPF	67.5898
SRR1613978	Lateral seeds	no	20DAPF	60.2481
SRR3744786	stem	no	mature	45.744
SRR3744787	stem	no	mature	48.5922
SRR3744772	stem	no	mature	42.0735
SRX765691	seedling shoot apex	no	4-6 week old seedling	28.4379
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	31.0249
SRR1089478	leaf	Virus-free	plantlets	27.3378
SRR1089477	leaf	ASGV-infected	plantlets	24.4761
SRR767660	leaf	uninfected	fully developed	41.7857
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	12.971
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	27.34
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	96.2127
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	82.6997
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	71.9984
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	27.8751
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	41.1507
SRR6308182	young leaf	no	immature leaves	23.3754
SRR3744769	leaf	no	mature	24.62
SRR3744770	leaf	no	mature	22.6579
SRR3744771	leaf	no	mature	22.8612
SRR5405145	leaf	no	mature	23.0387
SRR6320561	leaf	no	mature	29.3447