Gene detail

Detail information of MD10G1068200 Annotation

Gene ID	Annotation
MD10G1068200	SUMO-activating enzyme 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1068200	mRNA	Chr10	9395097	9401946	+

Sequences

CDS:

MD10G1068200

TGCCTTTACCATTTTCCCCTAGACATAGCAAAGTAGGCCAAAAAAAAGAGTCAAACAAAACCCTCATACCCAAATGGGGAGCAGAGGAAGAAGAGATGGGAGACTCAAAAGTCTCAAACTTTATTAACTCCGCCCACGGGCACCACCCTCCCTCTCTCTCTCTCGTCGCTCCTCCATTACTCTCACACAAAAGACAGAACCTAGAGAGAGAAAGAGAGGGAGGGGTTTTTAGGCTGTGAAGTTTTCACCTTTTTGCTGTGTTTTAGGCGCTCTCAACCTCGACAGCCCTCCTTCCTCGAACCTCCCCACCTGGGTCTCCACGACCACAACCCACCATTCCAAGATTCCCCCCACGTCCCCTGTTCGATTTCCACAAACCCATCTAAAAGCTAAGCCCACCCACCTCTCTCCCCCTCTGTGCTATTAAGTCCAATCCACTGTTGCAGTCTTCCCCTTTCTCTCTCTAGCTGCTTCTTCTGCAACTCTCATGGCTTCCCGGAAACACTTGGCCGCTGTAAAGGGCGCGAAAGTGCTCATGGTTGGGGCAGGTGGTATCGGCTGCGAGCTTCTCAAGACTCTCGCTCTCTCTGGCTTCCAAGACATTCATATTATTGACATGGACACTATAGAAGTGAGTAACCTCAACAGACAATTCCTCTTCCGACAATCACATGTTGGGCAATCCAAAGCCAAAGTTGCTCGGGAAGCTGTCTTAAAATTTAGACCTGAGATAAGCATAACTTCATACCATGCCAATGTAAAGGATTCTGACTTCAATGTGGACTTCTTTAAGAACTTTAATGTGGTCTTGAATGGACTTGACAACTTAGATGCTAGACGACATGTGAATCGCCTGTGTTTGGCAGCTGATGTTCCCTTGATTGAAAGTGGGACAACTGGGTTCCTTGGACAGGTGACTGTACATGTGAAGGGAAAAACAGAGTGCTATGAATGTCAGCCAAAACCTGCTCCTAAAACTTATCCTGTCTGTACCATTACCAGTACTCCATCAAAGTTTGTTCACTGTATCGTATGGGCAAAGGAACTTCTCTTTGCAAAGTTGTTTGGGGATAAGAATCAGGCAAATGATTTGAATGTACGTTCTAGTGATGGTGCTAGCTCATCAGAACAGGCTGAAGATGTATTTGAACATAGAAATGATGAAGACATTGAGCAGTATGGAAGAAGAATATATGATCATGTATTTGGTTATAACATTGAGCAAGCTTTGTCTAATGAGGAGACATGGAAGAACCGCAATAGACCAAGGCCTATATATAGTAGGGATGTCATGCCTAATGGGCTCGGTCAACAGAATGGAAGTATGGAAAAGAATGGTGCATCCAATGATGTATATTCAGTATCTGCCATGGCATCTCTAGGAATGAAGAATCCACAGGATATATGGAGCCTTATGGAAAATTCCAAAGTCTTTCTTGAGGCTTTGAAACTATTTTTCTTGAAAAGGCAGAAGGAGATTGGAAATATGACTTTTGATAAAGATGATCAGCTAGCTGTAGAATTTGTTACTTCTGCTGCAAATATACGGGCTGCTTCTTTTGGAATCCCATTGCATAGCCTTTTTGAAGCCAAAGGCATTGCTGGTAATATTGTTCATGCTGTTGCAACAACGAATGCTATTATTGCTGGGTTGATTGTCATTGAGGCAATAAAGGTGCTGCAAAATGATACAAAGAATTATAGGATGACATATTGTCTGGAACATCCAGCAAGAAAAATGCTGCTCATGCCAGTGGATCCATTTGAGCCTAACAAGTCCTGCTATGTCTGTTCAGAGACACCACTATCACTTGAGATCAATACTCACTGCACAAAGTTGCGGGATGTAGTTGAAAAGATTGTTAGAGCCAAGCTTGGGATGAGCTTGCCACTCATTATGCATGGGTCAGCCCTTCTTTATGAAGTTGGTGATGACCTGGACGAAGACATGGTTGCAAATTATGCAGCAAACCTTGATAAGGTGCTGTCTGAGCTTCCTACGCCAGTTACCAGTGGGACCATGCTGACAATTGAGGATCTTCAGCAAGAACTATCATGCAAGATCAATATTAAGCACAGAGAGGAGTTTGATGAAGAGAAGGAACCCGATGGAATGGTTTTATCTGGTTGGACTCAATCTCCTGCGGTGGCACAGGATGACAAGAAGTCTACTGCAAATGCTGGAAGCACGTCAAATGCATCATCATCTATGGAGGCTGAAAGGACTGATGATGTTGAAACTACTCCTGGAAGGAAGAGAAAACTGTCTGAGGTTTCTGAGGCAGTCAATCCAGATATACCAAGTGTTGCTGGCAGTAGTACAAGAAATCCCGAGAAATTGGAACTTGTTGATGACGACGATGAGCTTGTCATATTTGATAATTGGGATTCAGTCACCAGCAAGAAGATAAAGTTGCAATAGTTCATCCTTGGATCTCTAATGTGGAGGCGTCAGTTCAGTTCTAATTTTGTACCATTAGTGAGAAGCACTGATTCTTTATGGGAGGTTGGCTCAATTGCTGTTTATTAGGTCGAGCCGGTACAAATTAAGCAGTCTTTTCGCTTCCCTTCTTCTGTGGTTGTAAGTGTAATGTGTCTTCTTCTTCCTAACTTAGTTGACAGATTTTTAGCCCTGTAACTTGAAAACCATAACTTAGAAAATGCCCCTGAAATGACTAAACTAGTGAATCATGAATTTCGGAGTTCCTTTTTATGTCATCATGAATTAAGTT

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	ThiF

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G21470.1	1	ATSAE2;EMB2764;SAE2\|SUMO-ACTIVATING ENZYME 2;EMBRYO DEFECTIVE 2764
Arabidopsis thaliana	AT2G21470.2	1	ATSAE2;EMB2764;SAE2\|SUMO-ACTIVATING ENZYME 2;EMBRYO DEFECTIVE 2764
Arabidopsis thaliana	AT2G21470.3	0.981	ATSAE2;EMB2764;SAE2\|SUMO-ACTIVATING ENZYME 2;EMBRYO DEFECTIVE 2764
Prunus persica	Prupe.8G090100.1.p	1	SUMO-activating enzyme 2
Pyrus communis	PCP015161.1	1	-
Pyrus x bretschneideri	Pbr015796.2	1	-
Rosa multiflora	Rmu_sc0000776.1_g000024.1	1	-
Rubus occidentalis	Ro02_G16183	1	-
Fragaria vesca	mrna21856.1	1	SUMO-activating enzyme 2
Vitis vinifera	GSVIVT01023831001	1	SUMO-activating enzyme 2
Populus trichocarpa	Potri.004G158900.1	1	SUMO-activating enzyme 2
Nicotiana benthamiana	Niben101Scf04861g00027.1	1	SUMO-activating enzyme 2 LENGTH=700
Nicotiana benthamiana	Niben101Scf10889g00005.1	0.753	SUMO-activating enzyme 2 LENGTH=700
Oryza sativa	LOC_Os07g39780.3	1	"SUMO-activating enzyme subunit 2, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0008641	small protein activating enzyme activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006464	cellular protein modification process	biological_process

KEGG

KO	Description	Enzyme
K10685	ubiquitin-like 1-activating enzyme E1 B	EC:6.2.1.45

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00899.17	ThiF	5	408	5.00E-73
PF10585.5	UBA_e1_thiolCys	313	369	3.90E-05
PF14732.2	UAE_UbL	442	534	1.20E-20

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.97432
SRR5252888	dormant buds	no	dormant buds(0 month)	23.3831
SRR5252889	dormant buds	no	dormant buds(0 month)	24.1349
SRR5252886	dormant buds	no	dormant buds(1 months)	22.5569
SRR5252887	dormant buds	no	dormant buds(1 months)	24.6461
SRR5252884	dormant buds	no	dormant buds(2 months)	26.4715
SRR5252882	dormant buds	no	dormant buds(3 months)	21.417
SRR5252883	dormant buds	no	dormant buds(3 months)	23.8208
SRR5252880	dormant buds	no	dormant buds(4 months)	24.9156
SRR5252881	dormant buds	no	dormant buds(4 months)	24.1458
SRR5252878	bud break	no	bud break	20.4076
SRR5252879	bud break	no	bud break	15.9596
SRR3744766	flower	no	mature	16.8432
SRR3744767	flower	no	mature	16.0886
SRR3744768	flower	no	mature	16.9465
SRR6308190	stigmas	no	open flowers	12.5735
SRR6308181	styles	no	open flowers	13.01
SRR6308188	filaments	no	open flowers	13.6078
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	16.5702
SRR6308192	pollen	no	open flowers	1.15091
SRR6308191	petals	no	open flowers	15.7357
SRR6308194	sepals	no	open flowers	20.0235
SRR6308193	receptacles	no	open flowers	19.6496
SRR6308189	ovaries	no	open flowers	14.3931
SRR3384922	fruit	no	1 week after full bloom	15.1846
SRR3384921	fruit	no	2 week after full bloom	15.5376
SRR3384920	fruit	no	3 week after full bloom	9.86509
SRR3384919	fruit	no	4 week after full bloom	10.1062
SRR3384923	fruit	no	5 week after full bloom	10.505
SRR3384918	fruit	no	6 week after full bloom	9.06785
SRR3384917	fruit	no	8 week after full bloom	9.1402
SRR3384916	fruit	no	10 week after full bloom	6.79248
SRR3384915	fruit	no	12 week after full bloom	6.84047
SRR3384914	fruit	no	14 week after full bloom	7.25903
SRR3384913	fruit	no	16 week after full bloom	6.86797
SRR3384912	fruit	no	18 week after full bloom	6.41236
SRR3384911	fruit	no	19 week after full bloom	7.12793
SRR3384910	fruit	no	20 week after full bloom	6.14894
SRR768128	whole fruit	no	25 days post anthesis	13.7335
SRR768129	whole fruit	no	35 days post anthesis	12.9213
SRR768130	whole fruit	no	60 days post anthesis	8.09924
SRR768131	whole fruit	no	87 days post anthesis	7.93023
SRR7343308	immature fruit flesh	no	immature	12.9559
SRR7343309	immature fruit flesh	no	immature	11.35
SRR6320494	ripe fruit flesh	no	mature	9.59127
SRR5405143	ripe fruit peel	no	mature	12.5751
SRR6320572	ripe fruit peel	no	mature	9.82916
SRR7403504	fruit	uninfected	mature	9.76185
SRR7403506	fruit	uninfected	mature	10.3991
SRR7403507	fruit	uninfected	mature	10.8994
SRR7403500	fruit	infected with penicillium expansum	mature	6.86154
SRR7403501	fruit	infected with penicillium expansum	mature	5.692
SRR7403508	fruit	infected with penicillium expansum	mature	4.60484
SRR7403502	fruit	infected with penicillium expansum	mature	6.16868
SRR7403503	fruit	infected with penicillium expansum	mature	6.69307
SRR7403505	fruit	infected with penicillium expansum	mature	6.61789
SRR1613973	Central seeds	no	20DAPF	10.6197
SRR1613974	Central seeds	no	20DAPF	12.5972
SRR1613975	Central seeds	no	20DAPF	11.1726
SRR1613976	Lateral seeds	no	20DAPF	10.2581
SRR1613977	Lateral seeds	no	20DAPF	11.8425
SRR1613978	Lateral seeds	no	20DAPF	12.0789
SRR3744786	stem	no	mature	22.288
SRR3744787	stem	no	mature	22.3334
SRR3744772	stem	no	mature	23.9417
SRX765691	seedling shoot apex	no	4-6 week old seedling	21.033
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	17.5878
SRR1089478	leaf	Virus-free	plantlets	15.7858
SRR1089477	leaf	ASGV-infected	plantlets	16.6814
SRR767660	leaf	uninfected	fully developed	7.48752
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	11.0289
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.16454
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.99875
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	2.18687
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.82858
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.168
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.4735
SRR6308182	young leaf	no	immature leaves	20.1067
SRR3744769	leaf	no	mature	24.8344
SRR3744770	leaf	no	mature	25.0931
SRR3744771	leaf	no	mature	27.2068
SRR5405145	leaf	no	mature	17.5814
SRR6320561	leaf	no	mature	10.6718