Gene detail

Detail information of MD10G1116600 Annotation

Gene ID	Annotation
MD10G1116600	methylthioadenosine nucleosidase 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1116600	mRNA	Chr10	19427237	19431320	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G38800.1	1	ATMTAN1;ATMTN1;MTAN1;MTN1\|ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 1;METHYLTHIOADENOSINE NUCLEOSIDASE 1
Prunus persica	Prupe.8G159400.1.p	1	methylthioadenosine nucleosidase 1
Pyrus communis	PCP017382.1	1	-
Pyrus x bretschneideri	Pbr028528.1	1	-
Pyrus x bretschneideri	Pbr011000.1	0.8	-
Rosa multiflora	Rmu_sc0016035.1_g000004.1	1	-
Rubus occidentalis	Ro02_G08008	1	-
Fragaria vesca	mrna07372.1	1	methylthioadenosine nucleosidase 1
Vitis vinifera	GSVIVT01024109001	1	methylthioadenosine nucleosidase 1
Solanum lycopersicum	Solyc01g111060.2.1	1	methylthioadenosine nucleosidase 1
Populus trichocarpa	Potri.004G167200.2	1	methylthioadenosine nucleosidase 1
Nicotiana benthamiana	Niben101Scf00135g00025.1	1	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1
Nicotiana benthamiana	Niben101Scf01847g01012.1	0.647	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1
Oryza sativa	LOC_Os06g02220.1	1	"MTA/SAH nucleosidase, putative, expressed"
Zea mays	GRMZM5G896883_P01	1	MTA/SAH nucleosidase;

Gene Ontology

GO term	Description	Category
GO:0003824	catalytic activity	molecular_function
GO:0009116	nucleoside metabolic process	biological_process

KEGG

KO	Description	Enzyme
K01244	5'-methylthioadenosine nucleosidase	EC:3.2.2.16

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01048.16	PNP_UDP_1	27	254	4.70E-23

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	27.7066
SRR5252888	dormant buds	no	dormant buds(0 month)	26.848
SRR5252889	dormant buds	no	dormant buds(0 month)	28.8177
SRR5252886	dormant buds	no	dormant buds(1 months)	20.4245
SRR5252887	dormant buds	no	dormant buds(1 months)	20.069
SRR5252884	dormant buds	no	dormant buds(2 months)	22.2389
SRR5252882	dormant buds	no	dormant buds(3 months)	26.4044
SRR5252883	dormant buds	no	dormant buds(3 months)	35.6524
SRR5252880	dormant buds	no	dormant buds(4 months)	22.5873
SRR5252881	dormant buds	no	dormant buds(4 months)	20.8925
SRR5252878	bud break	no	bud break	26.7363
SRR5252879	bud break	no	bud break	17.0835
SRR3744766	flower	no	mature	30.037
SRR3744767	flower	no	mature	31.413
SRR3744768	flower	no	mature	32.0126
SRR6308190	stigmas	no	open flowers	34.0991
SRR6308181	styles	no	open flowers	36.1621
SRR6308188	filaments	no	open flowers	32.3977
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	34.2036
SRR6308192	pollen	no	open flowers	0.980926
SRR6308191	petals	no	open flowers	39.4675
SRR6308194	sepals	no	open flowers	21.4072
SRR6308193	receptacles	no	open flowers	36.4531
SRR6308189	ovaries	no	open flowers	37.9276
SRR3384922	fruit	no	1 week after full bloom	25.6431
SRR3384921	fruit	no	2 week after full bloom	26.5104
SRR3384920	fruit	no	3 week after full bloom	27.0748
SRR3384919	fruit	no	4 week after full bloom	23.7963
SRR3384923	fruit	no	5 week after full bloom	44.0387
SRR3384918	fruit	no	6 week after full bloom	27.339
SRR3384917	fruit	no	8 week after full bloom	34.6142
SRR3384916	fruit	no	10 week after full bloom	40.5371
SRR3384915	fruit	no	12 week after full bloom	34.4635
SRR3384914	fruit	no	14 week after full bloom	44.5149
SRR3384913	fruit	no	16 week after full bloom	46.0813
SRR3384912	fruit	no	18 week after full bloom	49.5444
SRR3384911	fruit	no	19 week after full bloom	48.9886
SRR3384910	fruit	no	20 week after full bloom	48.713
SRR768128	whole fruit	no	25 days post anthesis	29.9731
SRR768129	whole fruit	no	35 days post anthesis	25.2179
SRR768130	whole fruit	no	60 days post anthesis	49.9212
SRR768131	whole fruit	no	87 days post anthesis	48.6956
SRR7343308	immature fruit flesh	no	immature	40.3992
SRR7343309	immature fruit flesh	no	immature	51.2132
SRR6320494	ripe fruit flesh	no	mature	77.348
SRR5405143	ripe fruit peel	no	mature	57.4208
SRR6320572	ripe fruit peel	no	mature	21.2403
SRR7403504	fruit	uninfected	mature	87.0094
SRR7403506	fruit	uninfected	mature	83.3241
SRR7403507	fruit	uninfected	mature	81.6346
SRR7403500	fruit	infected with penicillium expansum	mature	33.7761
SRR7403501	fruit	infected with penicillium expansum	mature	34.7758
SRR7403508	fruit	infected with penicillium expansum	mature	38.0164
SRR7403502	fruit	infected with penicillium expansum	mature	38.0369
SRR7403503	fruit	infected with penicillium expansum	mature	39.5368
SRR7403505	fruit	infected with penicillium expansum	mature	36.2697
SRR1613973	Central seeds	no	20DAPF	24.5705
SRR1613974	Central seeds	no	20DAPF	24.0971
SRR1613975	Central seeds	no	20DAPF	20.4046
SRR1613976	Lateral seeds	no	20DAPF	26.7503
SRR1613977	Lateral seeds	no	20DAPF	25.464
SRR1613978	Lateral seeds	no	20DAPF	24.1979
SRR3744786	stem	no	mature	35.4701
SRR3744787	stem	no	mature	35.2519
SRR3744772	stem	no	mature	35.8626
SRX765691	seedling shoot apex	no	4-6 week old seedling	13.1725
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	18.919
SRR1089478	leaf	Virus-free	plantlets	18.6786
SRR1089477	leaf	ASGV-infected	plantlets	21.6762
SRR767660	leaf	uninfected	fully developed	43.8385
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	8.40309
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	26.7395
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	23.1185
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	61.3515
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	37.304
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	33.6569
SRR6308182	young leaf	no	immature leaves	21.2671
SRR3744769	leaf	no	mature	26.2964
SRR3744770	leaf	no	mature	23.7455
SRR3744771	leaf	no	mature	24.441
SRR5405145	leaf	no	mature	29.386
SRR6320561	leaf	no	mature	21.525