Gene detail

Detail information of MD10G1118200 Annotation

Gene ID	Annotation
MD10G1118200	triosephosphate isomerase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1118200	mRNA	Chr10	19549477	19552985	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G21170.1	1	PDTPI;TIM\|PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE;triosephosphate isomerase
Arabidopsis thaliana	AT2G21170.2	0.739	PDTPI;TIM\|PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE;triosephosphate isomerase
Pyrus communis	PCP017451.1	1	-
Pyrus x bretschneideri	Pbr028535.1	1	-
Pyrus x bretschneideri	Pbr028534.1	1	-
Fragaria vesca	mrna07388.1	1	triosephosphate isomerase
Vitis vinifera	GSVIVT01024086001	1	triosephosphate isomerase
Solanum lycopersicum	Solyc01g111120.2.1	1	triosephosphate isomerase
Populus trichocarpa	Potri.004G168000.2	1	triosephosphate isomerase
Populus trichocarpa	Potri.009G129500.1	0.726	triosephosphate isomerase
Nicotiana benthamiana	Niben101Scf04327g01005.1	1	triosephosphate isomerase LENGTH=315
Oryza sativa	LOC_Os09g36450.1	1	"triosephosphate isomerase, chloroplast precursor, putative, expressed"
Zea mays	GRMZM2G002807_P01	1	Triosephosphate isomerase

Gene Ontology

GO term	Description	Category
GO:0008152	metabolic process	biological_process
GO:0004807	triose-phosphate isomerase activity	molecular_function

KEGG

KO	Description	Enzyme
K01803	triosephosphate isomerase (TIM)	EC:5.3.1.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00121.14	TIM	74	312	1.70E-87

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	60.2292
SRR5252888	dormant buds	no	dormant buds(0 month)	17.4134
SRR5252889	dormant buds	no	dormant buds(0 month)	26.8966
SRR5252886	dormant buds	no	dormant buds(1 months)	19.6101
SRR5252887	dormant buds	no	dormant buds(1 months)	21.3419
SRR5252884	dormant buds	no	dormant buds(2 months)	18.7723
SRR5252882	dormant buds	no	dormant buds(3 months)	22.1658
SRR5252883	dormant buds	no	dormant buds(3 months)	17.3148
SRR5252880	dormant buds	no	dormant buds(4 months)	17.9905
SRR5252881	dormant buds	no	dormant buds(4 months)	21.0781
SRR5252878	bud break	no	bud break	20.5738
SRR5252879	bud break	no	bud break	23.8444
SRR3744766	flower	no	mature	18.231
SRR3744767	flower	no	mature	16.6061
SRR3744768	flower	no	mature	19.3248
SRR6308190	stigmas	no	open flowers	16.9065
SRR6308181	styles	no	open flowers	18.7996
SRR6308188	filaments	no	open flowers	34.9536
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	31.6606
SRR6308192	pollen	no	open flowers	72.9456
SRR6308191	petals	no	open flowers	29.3847
SRR6308194	sepals	no	open flowers	34.6966
SRR6308193	receptacles	no	open flowers	28.3903
SRR6308189	ovaries	no	open flowers	27.6802
SRR3384922	fruit	no	1 week after full bloom	54.7556
SRR3384921	fruit	no	2 week after full bloom	41.2721
SRR3384920	fruit	no	3 week after full bloom	51.8899
SRR3384919	fruit	no	4 week after full bloom	60.4324
SRR3384923	fruit	no	5 week after full bloom	65.793
SRR3384918	fruit	no	6 week after full bloom	49.8762
SRR3384917	fruit	no	8 week after full bloom	43.407
SRR3384916	fruit	no	10 week after full bloom	55.8974
SRR3384915	fruit	no	12 week after full bloom	51.9142
SRR3384914	fruit	no	14 week after full bloom	53.4844
SRR3384913	fruit	no	16 week after full bloom	41.7264
SRR3384912	fruit	no	18 week after full bloom	47.0589
SRR3384911	fruit	no	19 week after full bloom	53.4442
SRR3384910	fruit	no	20 week after full bloom	39.6073
SRR768128	whole fruit	no	25 days post anthesis	34.2036
SRR768129	whole fruit	no	35 days post anthesis	52.1721
SRR768130	whole fruit	no	60 days post anthesis	47.1959
SRR768131	whole fruit	no	87 days post anthesis	27.0863
SRR7343308	immature fruit flesh	no	immature	24.3797
SRR7343309	immature fruit flesh	no	immature	21.0153
SRR6320494	ripe fruit flesh	no	mature	23.2753
SRR5405143	ripe fruit peel	no	mature	22.5005
SRR6320572	ripe fruit peel	no	mature	32.9527
SRR7403504	fruit	uninfected	mature	41.5538
SRR7403506	fruit	uninfected	mature	41.0741
SRR7403507	fruit	uninfected	mature	41.2423
SRR7403500	fruit	infected with penicillium expansum	mature	26.8046
SRR7403501	fruit	infected with penicillium expansum	mature	30.0659
SRR7403508	fruit	infected with penicillium expansum	mature	27.6203
SRR7403502	fruit	infected with penicillium expansum	mature	27.5088
SRR7403503	fruit	infected with penicillium expansum	mature	28.4062
SRR7403505	fruit	infected with penicillium expansum	mature	32.6058
SRR1613973	Central seeds	no	20DAPF	27.7373
SRR1613974	Central seeds	no	20DAPF	29.3201
SRR1613975	Central seeds	no	20DAPF	29.5031
SRR1613976	Lateral seeds	no	20DAPF	26.0714
SRR1613977	Lateral seeds	no	20DAPF	25.2476
SRR1613978	Lateral seeds	no	20DAPF	25.1619
SRR3744786	stem	no	mature	14.6312
SRR3744787	stem	no	mature	12.565
SRR3744772	stem	no	mature	13.5573
SRX765691	seedling shoot apex	no	4-6 week old seedling	22.704
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	27.267
SRR1089478	leaf	Virus-free	plantlets	54.2323
SRR1089477	leaf	ASGV-infected	plantlets	42.0675
SRR767660	leaf	uninfected	fully developed	97.0995
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	53.1349
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	64.128
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	36.1552
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	15.2178
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	41.2794
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	36.9402
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	30.5655
SRR6308182	young leaf	no	immature leaves	28.0789
SRR3744769	leaf	no	mature	22.5763
SRR3744770	leaf	no	mature	22.1828
SRR3744771	leaf	no	mature	23.0832
SRR5405145	leaf	no	mature	64.9908
SRR6320561	leaf	no	mature	54.1809