| Gene ID | Annotation |
|---|---|
| MD10G1126500 | Splicing factor |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| -- | -- | -- |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD10G1126500 | mRNA | Chr10 | 20632743 | 20641952 | - |
| CDS: |
| MD10G1126500 |
| Protein: |
| MD10G1126500 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Pyrus communis | PCP032019.1 | 1 | - |
| Rosa multiflora | Rmu_sc0000531.1_g000006.1 | 1 | - |
| Rubus occidentalis | Ro02_G22740 | 1 | - |
| Vitis vinifera | GSVIVT01023998001 | 1 | "Splicing factor, CC1-like" |
| Populus trichocarpa | Potri.009G137200.1 | 1 | "Splicing factor, CC1-like" |
| Populus trichocarpa | Potri.004G177000.1 | 1 | "Splicing factor, CC1-like" |
| Oryza sativa | LOC_Os03g05830.1 | 1 | "transposon protein, putative, CACTA, En/Spm sub-class, expressed" |
| Oryza sativa | LOC_Os10g30370.2 | 1 | "RNA recognition motif containing protein, putative, expressed" |
| Zea mays | GRMZM2G071589_P01 | 1 | - |
| GO term | Description | Category |
|---|---|---|
| GO:0005634 | nucleus | cellular component |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0006397 | mRNA processing | biological_process |
| KO | Description | Enzyme |
|---|---|---|
| K13091 | RNA-binding protein 39 | - |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.18 | RRM_1 | 225 | 283 | 6.00E-09 |
| PF00076.18 | RRM_1 | 320 | 389 | 5.70E-21 |
| PF15519.2 | RBM39linker | 409 | 524 | 2.40E-21 |
 |