Gene detail

Detail information of MD10G1129200 Annotation

Gene ID	Annotation
MD10G1129200	Zim17-type zinc finger protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0397	mitochondrial protein import protein ZIM17 translation initiation factor IF-3

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1129200	mRNA	Chr10	20976099	20978012	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G27280.1	1	Zim17-type zinc finger protein
Prunus persica	Prupe.8G169800.1.p	1	Zim17-type zinc finger protein
Pyrus x bretschneideri	Pbr027371.1	1	-
Rosa multiflora	Rmu_sc0002080.1_g000007.1	1	-
Rubus occidentalis	Ro02_G19302	1	-
Fragaria vesca	mrna23748.1	1	Zim17-type zinc finger protein
Vitis vinifera	GSVIVT01008732001	1	Zim17-type zinc finger protein
Solanum lycopersicum	Solyc04g082020.2.1	1	Zim17-type zinc finger protein
Populus trichocarpa	Potri.005G246200.1	1	Zim17-type zinc finger protein
Nicotiana benthamiana	Niben101Scf00539g07034.1	1	DNL-type zinc finger protein
Nicotiana benthamiana	Niben101Scf03865g01007.1	0.844	DNL-type zinc finger protein
Oryza sativa	LOC_Os06g50870.1	1	"DNL zinc finger domain containing protein, putative, expressed"
Zea mays	GRMZM2G152056_P01	1	DNL zinc finger family protein

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
K17808	mitochondrial protein import protein ZIM17	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05180.8	zf-DNL	131	184	2.80E-16

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	19.742
SRR5252888	dormant buds	no	dormant buds(0 month)	12.6363
SRR5252889	dormant buds	no	dormant buds(0 month)	13.7602
SRR5252886	dormant buds	no	dormant buds(1 months)	7.49091
SRR5252887	dormant buds	no	dormant buds(1 months)	11.1459
SRR5252884	dormant buds	no	dormant buds(2 months)	9.80818
SRR5252882	dormant buds	no	dormant buds(3 months)	12.0231
SRR5252883	dormant buds	no	dormant buds(3 months)	15.2847
SRR5252880	dormant buds	no	dormant buds(4 months)	9.99927
SRR5252881	dormant buds	no	dormant buds(4 months)	9.9889
SRR5252878	bud break	no	bud break	13.2191
SRR5252879	bud break	no	bud break	6.02405
SRR3744766	flower	no	mature	44.4051
SRR3744767	flower	no	mature	41.8477
SRR3744768	flower	no	mature	45.9562
SRR6308190	stigmas	no	open flowers	31.331
SRR6308181	styles	no	open flowers	29.4736
SRR6308188	filaments	no	open flowers	10.7321
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	27.402
SRR6308192	pollen	no	open flowers	70.6678
SRR6308191	petals	no	open flowers	18.6181
SRR6308194	sepals	no	open flowers	20.0362
SRR6308193	receptacles	no	open flowers	14.6348
SRR6308189	ovaries	no	open flowers	21.6897
SRR3384922	fruit	no	1 week after full bloom	13.4746
SRR3384921	fruit	no	2 week after full bloom	13.8469
SRR3384920	fruit	no	3 week after full bloom	24.2223
SRR3384919	fruit	no	4 week after full bloom	21.2514
SRR3384923	fruit	no	5 week after full bloom	33.9213
SRR3384918	fruit	no	6 week after full bloom	25.6777
SRR3384917	fruit	no	8 week after full bloom	31.4481
SRR3384916	fruit	no	10 week after full bloom	38.6917
SRR3384915	fruit	no	12 week after full bloom	47.7202
SRR3384914	fruit	no	14 week after full bloom	34.305
SRR3384913	fruit	no	16 week after full bloom	23.5783
SRR3384912	fruit	no	18 week after full bloom	38.9587
SRR3384911	fruit	no	19 week after full bloom	35.3707
SRR3384910	fruit	no	20 week after full bloom	49.2815
SRR768128	whole fruit	no	25 days post anthesis	23.0336
SRR768129	whole fruit	no	35 days post anthesis	17.5374
SRR768130	whole fruit	no	60 days post anthesis	26.5759
SRR768131	whole fruit	no	87 days post anthesis	17.3083
SRR7343308	immature fruit flesh	no	immature	26.2265
SRR7343309	immature fruit flesh	no	immature	42.8117
SRR6320494	ripe fruit flesh	no	mature	50.326
SRR5405143	ripe fruit peel	no	mature	51.1457
SRR6320572	ripe fruit peel	no	mature	40.0148
SRR7403504	fruit	uninfected	mature	74.2468
SRR7403506	fruit	uninfected	mature	74.1874
SRR7403507	fruit	uninfected	mature	69.8278
SRR7403500	fruit	infected with penicillium expansum	mature	19.6658
SRR7403501	fruit	infected with penicillium expansum	mature	20.8455
SRR7403508	fruit	infected with penicillium expansum	mature	20.5156
SRR7403502	fruit	infected with penicillium expansum	mature	20.7109
SRR7403503	fruit	infected with penicillium expansum	mature	23.1324
SRR7403505	fruit	infected with penicillium expansum	mature	19.779
SRR1613973	Central seeds	no	20DAPF	8.86725
SRR1613974	Central seeds	no	20DAPF	10.3216
SRR1613975	Central seeds	no	20DAPF	10.2322
SRR1613976	Lateral seeds	no	20DAPF	11.372
SRR1613977	Lateral seeds	no	20DAPF	13.6284
SRR1613978	Lateral seeds	no	20DAPF	12.8937
SRR3744786	stem	no	mature	43.3886
SRR3744787	stem	no	mature	41.9739
SRR3744772	stem	no	mature	42.1764
SRX765691	seedling shoot apex	no	4-6 week old seedling	8.2901
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	14.7828
SRR1089478	leaf	Virus-free	plantlets	33.451
SRR1089477	leaf	ASGV-infected	plantlets	35.1874
SRR767660	leaf	uninfected	fully developed	33.2461
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	18.6047
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	17.9612
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	94.0356
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	24.7527
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	43.3297
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	32.6132
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	25.5239
SRR6308182	young leaf	no	immature leaves	12.3886
SRR3744769	leaf	no	mature	41.4868
SRR3744770	leaf	no	mature	44.4415
SRR3744771	leaf	no	mature	43.4698
SRR5405145	leaf	no	mature	77.7782
SRR6320561	leaf	no	mature	68.8034