Gene detail

Detail information of MD10G1133000 Annotation

Gene ID	Annotation
MD10G1133000	Alanyl-tRNA synthetase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0847	1 long-chain-alcohol oxidase activity alanine-tRNA ligase activity serine-type peptidase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1133000	mRNA	Chr10	21451836	21460115	+

Sequences

CDS:

MD10G1133000

TTTCTCAGCACAACGACATTTAGTGGGACAATCGCAGTACACCCATGGAAAGCTTGAAGCTTTCACAGCCCTTGTGCAGCAGCCATGGCTGGAAATCTCTCATTCCACTTCCCACTTCAAGAGTTTTGCCCAAATCAACTTTCCACATCTACCCAAATCGTAAATTGGGCCTTTCCACCGGTTTCATTACCACAGCAAACGTAGCCCTCTTCTCTTCCAATGTATTTCCCAGCAGGCATTGTGTTGTAACACAAGTTCGGAGCATGAAGTTTAGTACTAAAAGTACATCAGCATCTGTACAGTCTGCAACTGATGAACTGGTGGAGGGTAAGTCCAAAGATCTCTCTGTGAGTGGGGATTCCATACGCCGTCGGTTTCTTGATTTTTATGCTGCCCGTGGTCACAAGGTTCTTCCAAGTGCTTCTCTTGTGCCAGATGATCCCACAGTTCTACTAACGATTGCGGGAATGCTCCAATTTAAGCCCATATTCCTTGGTCAGGTTCCTAGACAAGTTTCTCGTGCTACAACTGCACAGAGGTGCATACGTACAAATGATGTGGAGAATGTAGGCCGAACAACTCGACATCATACGTTCTTTGAGATGCTTGGAAATTTCAGTTTTGGGGATTACTTCAAGAAGGAGGCAATCCAATGGGCATGGGAGCTTTCAACTGTAGAATTTGGGTTACCAGCTGACAGATTGTGGATTAGTGTCTTTGAAGATGATAATGAAGCTTTTGAAATCTGGCATGATGAGGTGGGCGTTCCCGTAGAGCGTATAAAGAGAATGGGTGAAGAGGACAACTTTTGGACTAGTGGAGTTACTGGTCCATGTGGTCCATGTTCTGAGATTTATTATGATTTCCATCCTGAGAGGGGTTATGCTGCCATTGATCTGAATGATGATACGAGGTTTATAGAGTTTTACAATTTAGTTTTTATGGAATTCAACAAGAAGGACGACGGCTCGCTTGAACCCTTGAAACAGAAGAATATAGATACTGGGCTTGGCTTGGAGCGTATGGCTCGCATTCTTCAGAAGGTTTCAAACAACTATGAAACCGACTTGATCTATCCAATTATAGAGAAAACCTCAGAATTGGCAAAAGTACCGTATGGTCTAGCTGATGATCAGTCAAAACTGAACCTCAAAATTATAGGAGATCACATGCGTGCAGTTGTATATCTCATATCGGATGGGGTTGTTCCATCAAATATTGGAAGAGGTTATGTCGTTCGACGGCTTATTAGAAGAGCCGTTCGTACTGGTAGGATGCTGGGTATAAAGGGAGATGGTCAGGGAAACCTTGAAGGAGCATTTTTACCAACCATTGCAGGAAAAGTAATCGAGTTGAGCAACTACATATATCCAGATTTGAAAGATAGAATACCCCGCATTCTTGAGGAGCTGAAAAGGGAAGAACTTAAATTTGTGCAGACATTGGAGAGAGGGGAAAAATATCTTGACCAAATGCTAGTTGAGTCACTGTTAAGTGCAAAAGAAAGTGGGACTACACCTTGCTTGTCAGGAAAAGATGCATTTCTTTTGTATGATACGTATGGATTTCCTGTCGAAATAACAGCGGAAGTGGCTGAAGAACGTGGTGTAAGTATAGATATGAATGGTTTTGATATTGAAATGGAAAACCAGAGACGTCAATCCCAGGCTGCACATAGTGCTGTTAAACTTTCCATGGGAAATAGTGCAGATGTTACAAAAGATGTTGGGGACACCAAATTTCTTGGATACGAAACCCTTTCTGCAACAGCCGTGGTGGAAAGTCTTATAGTGAATGGGAGCCCTGTCCTACAGGTTTCCGAAGGAAGTGAAGTAGAAGTGTTGCTGAACCGGACACCCTTTTATGCAGAATCAGGAGGTCAAATTGGAGATCATGGATTTTTATATATTCCACAAGGTGAAAACCATTACAAGGCTGTTATGGAGATAATAGATGTCCAAAAATCTATGGGTAACATATTTGTTCATAAGGGTACGATCAAAGAGGGAGCTTTAGAAGTTGGCAGAGAAGTGGAAGCCGCAGTGGATGCAAGACTAAGACAGCGGGCTAAGGTTCATCATACTGCTACTCATTTGCTGCAATCTGCACTCAAGAAAGTTATAGGTCAGGAAACATCACAAGCTGGTTCGTTGGTGGCTTTTGAGCGTCTAAGGTTTGATTTCAACTTCCACCGACCACTTACTGACAGCGAGCTTATGGAAATTGAAAGTCTGGTTAATAAATGGGTTGGGGATGCAACACCACTTCAAACTAAAGTGATGCCTCTTGCTGATGCCAAAGGAGCAGGGGCTATAGCAATGTTTGGTGAAAAATATGGTGAAGAGGTTCGTGTTGTAGAGGTTCCTGGAGTATCCATGGAACTTTGTGGTGGGACTCATGTGAGCAATACTTCTGAAATACGTGGATTCAAAATAATTTCAGAACAGGGTATTGCATCTGGAATCAGGCGTATAGAAGCTGTGGCGGGTGATGCCTTTATTGAATATGTCAATGCCAGAGATTATTACATGAAACAACTATGTTCCACCCTCAAAGTGAAAGCTGAAGAAGTAACAAACAGAGTAGATAATCTATTAGAGGAGTTACGGATGACAAGAAATGAAGCTTCTACCTTGCGGGAAAAAGCGGCAGTTTACAAAGCATCGATGATGGCAAGCAAAGCGATTTCTGTGGGAACTTCACAAGAAGTCAGGGTACTGGTTGAATCCATGGAAGACACTGATGCTGATTCACTAAAAAAAGCAGCCGAATATCTGATAGAGATGCTAGAAGATCCGGCAGCTGTCATTCTGGGCTCTTGTCCGGGTGATGAGAAGGTAAGCCTGGTTGCCGCATTCACCCCAGGAGTTGTCAATTTGGGAATACAGGCGGGGAAGTTCATAGGGCCCATAGCTAAGTTGTGTGGTGGTGGAGGCGGCGGAAGACCCAACTTTGCTCAGGCAGGAGGGCGGAAGCCTGAGAATTTGTCCAGTGCACTTGAAAAAGCTCGGTCCGAGATCATCTCAGTTCTATCTGAAAAGGCAAGTTAAAAAGTCATTCATCAGGGTTCTAGTTGAAGGCTCCAAAGGAATATTGTTTGTCATACTGGTGGGGATATGAATATAGATTTACTCTTTTTCCTTTCATGGAAAGGGGAAATTGTTAATATTGTAGAGCGTGGATAGCAAATAGGTCCATAAATCTCAGCCATCCAATTCCAGTTGTAAGTTGCACATTTGATTAGAAAATAAAAACCTATCTGAGATCGGCTTGATTTGTAACTTTTTGAGCAATAACGCCAGAGAACACTTAGGGTTCCAAATTTGAGAAGTTCAAAACCGTTGGGTTTTCTTTTAGAGCATATTTACTTACGAGGAATGTTAATAGCATGATGCAAAAGTAACCATCCGGTTCTCTCCCGTTATTTAACGTATGG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G22800.1	1	EMB1030;EMB263;EMB86\|EMBRYO DEFECTIVE 1030;EMBRYO DEFECTIVE 263;EMBRYO DEFECTIVE 86
Prunus persica	Prupe.8G174300.1.p	1	"Alanyl-tRNA synthetase, class IIc"
Pyrus communis	PCP004588.1	1	-
Pyrus x bretschneideri	Pbr033310.1	1	-
Rosa multiflora	Rmu_sc0001719.1_g000016.1	1	-
Rubus occidentalis	Ro02_G18397	1	-
Fragaria vesca	mrna17187.1	1	"Alanyl-tRNA synthetase, class IIc"
Vitis vinifera	GSVIVT01023918001	1	"Alanyl-tRNA synthetase, class IIc"
Solanum lycopersicum	Solyc01g111990.2.1	1	"Alanyl-tRNA synthetase, class IIc"
Populus trichocarpa	Potri.009G141300.1	1	"Alanyl-tRNA synthetase, class IIc"
Nicotiana benthamiana	Niben101Scf03913g01042.1	1	Alanine--tRNA ligase
Oryza sativa	LOC_Os06g13660.1	1	"alanyl-tRNA synthetase, putative, expressed"
Zea mays	GRMZM2G154664_P01	1	"Alanyl-tRNA synthetase, class IIc "

Gene Ontology

GO term	Description	Category
GO:0003676	nucleic acid binding	molecular_function
GO:0009507	chloroplast	cellular component
GO:0005524	ATP binding	molecular_function
GO:0004813	alanine-tRNA ligase activity	molecular_function
GO:0006419	alanyl-tRNA aminoacylation	biological_process

KEGG

KO	Description	Enzyme
K01872	alanyl-tRNA synthetase	EC:6.1.1.7

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07973.10	tRNA_SAD	768	811	3.00E-18

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	13.6605
SRR5252888	dormant buds	no	dormant buds(0 month)	4.46535
SRR5252889	dormant buds	no	dormant buds(0 month)	4.43009
SRR5252886	dormant buds	no	dormant buds(1 months)	4.1888
SRR5252887	dormant buds	no	dormant buds(1 months)	2.16411
SRR5252884	dormant buds	no	dormant buds(2 months)	4.39416
SRR5252882	dormant buds	no	dormant buds(3 months)	6.28878
SRR5252883	dormant buds	no	dormant buds(3 months)	4.47853
SRR5252880	dormant buds	no	dormant buds(4 months)	5.83148
SRR5252881	dormant buds	no	dormant buds(4 months)	5.78703
SRR5252878	bud break	no	bud break	9.74617
SRR5252879	bud break	no	bud break	12.4722
SRR3744766	flower	no	mature	4.75199
SRR3744767	flower	no	mature	4.59539
SRR3744768	flower	no	mature	4.38632
SRR6308190	stigmas	no	open flowers	4.28849
SRR6308181	styles	no	open flowers	4.41255
SRR6308188	filaments	no	open flowers	3.07348
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.688861
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	2.93906
SRR6308194	sepals	no	open flowers	7.82108
SRR6308193	receptacles	no	open flowers	2.64449
SRR6308189	ovaries	no	open flowers	3.94257
SRR3384922	fruit	no	1 week after full bloom	2.52622
SRR3384921	fruit	no	2 week after full bloom	2.63413
SRR3384920	fruit	no	3 week after full bloom	4.57252
SRR3384919	fruit	no	4 week after full bloom	3.75497
SRR3384923	fruit	no	5 week after full bloom	4.81301
SRR3384918	fruit	no	6 week after full bloom	3.26225
SRR3384917	fruit	no	8 week after full bloom	3.8365
SRR3384916	fruit	no	10 week after full bloom	4.13302
SRR3384915	fruit	no	12 week after full bloom	3.52378
SRR3384914	fruit	no	14 week after full bloom	4.09178
SRR3384913	fruit	no	16 week after full bloom	2.32756
SRR3384912	fruit	no	18 week after full bloom	1.79883
SRR3384911	fruit	no	19 week after full bloom	3.00694
SRR3384910	fruit	no	20 week after full bloom	2.39295
SRR768128	whole fruit	no	25 days post anthesis	7.07479
SRR768129	whole fruit	no	35 days post anthesis	2.48736
SRR768130	whole fruit	no	60 days post anthesis	2.52277
SRR768131	whole fruit	no	87 days post anthesis	3.91409
SRR7343308	immature fruit flesh	no	immature	6.42916
SRR7343309	immature fruit flesh	no	immature	3.95579
SRR6320494	ripe fruit flesh	no	mature	3.29105
SRR5405143	ripe fruit peel	no	mature	1.90269
SRR6320572	ripe fruit peel	no	mature	1.37937
SRR7403504	fruit	uninfected	mature	2.99072
SRR7403506	fruit	uninfected	mature	2.90053
SRR7403507	fruit	uninfected	mature	2.89416
SRR7403500	fruit	infected with penicillium expansum	mature	0.499763
SRR7403501	fruit	infected with penicillium expansum	mature	0.444982
SRR7403508	fruit	infected with penicillium expansum	mature	0.285141
SRR7403502	fruit	infected with penicillium expansum	mature	0.413355
SRR7403503	fruit	infected with penicillium expansum	mature	0.615579
SRR7403505	fruit	infected with penicillium expansum	mature	0.414998
SRR1613973	Central seeds	no	20DAPF	0.71536
SRR1613974	Central seeds	no	20DAPF	0.744362
SRR1613975	Central seeds	no	20DAPF	0.615422
SRR1613976	Lateral seeds	no	20DAPF	0.725706
SRR1613977	Lateral seeds	no	20DAPF	0.628602
SRR1613978	Lateral seeds	no	20DAPF	0.683926
SRR3744786	stem	no	mature	4.22477
SRR3744787	stem	no	mature	3.98955
SRR3744772	stem	no	mature	4.61297
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.13925
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.69934
SRR1089478	leaf	Virus-free	plantlets	6.7553
SRR1089477	leaf	ASGV-infected	plantlets	8.77963
SRR767660	leaf	uninfected	fully developed	18.3896
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	5.04098
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	18.6819
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.5187
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	3.4244
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.51077
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	15.2493
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.93002
SRR6308182	young leaf	no	immature leaves	4.15865
SRR3744769	leaf	no	mature	15.0725
SRR3744770	leaf	no	mature	14.7329
SRR3744771	leaf	no	mature	16.3085
SRR5405145	leaf	no	mature	42.3453
SRR6320561	leaf	no	mature	27.2968