Gene detail

Detail information of MD10G1137400 Annotation

Gene ID	Annotation
MD10G1137400	disease resistance protein (TIR-NBS-LRR class)

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0291	mitochondrion RNA-directed DNA polymerase activity RNA-dependent DNA biosynthetic process integrator complex subunit 3 UV excision repair protein RAD23 regulator of Ty1 transposition protein 103 mitochondrial mRNA modification

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1137400	mRNA	Chr10	22206865	22210474	+

Sequences

CDS:

MD10G1137400

ATGTTATACCTGTCTCTCCCAAAAGTTTCCACACTTCGATTGGTATATCGTCTGGTTGAGCAAATTGAATCATTATTATGCATTGATTCACCAGATGTTTGCACTGTGGGTATTTGGGGAATGGGTGGTATTGGCAAGACTACCCTTGCTGAAGCTGTTTTTCACCGACTCACTTCTAAATTTGAGGCTTCATGTTTTCTTCCAAATGTGAGGGAGGAGTCAGAAAGACATGGACTAAAGCACTTGCGGAATGTACTTCTTCGTCAGATGCTAAACGAAAAAGATCTAAATATTGACACTCCATCTATAGGACGAAGTTTTGTTCGAGAAAGGCTCAGCCGTACAAAGGTACTCATTGTTCTTGACGATGTGAATGATTCAAGCCAATTGGAACTTCTAGTTGGTGATGATATTCAGTTTGGTTGCGGAAGTCGAATCATTATAACAACTAGAGACAGACGACTACTTAAGAAAATGGCTGATGCTGACAAGATATTCAAGGTTGAGGGATTAAGGTGTGATGAAGCTCTTCAGCTCTTTCATTTGCACGCTTTCAAAAATGACTCTATGGGGTCATATTATACAGAGTTGTCAAGAATGGTGGTCGATTATGCCGGAGGCATACCACTAGCTCTTATAATTTTGGGCTCCTTATTCCTTCACTGCGAGAGCAAACAAGACTGGGAAGATCAATTGAACGAGTTGAAAAAGTTTCCCAACCGTAAAATTCAGAATGTGTTGAGACTAAGTTACGATGGATTAGAAAAAAATGCAAAGGAGATATTTCTTGATATAGCATGTTTTTACAAAGGGATGGATATACGTCTTGCAAAAGAAATGTTAGATATTCGTGGTTTTTTTGCAGGAGGTATTAAAGTTCTCATTGATAAGTCTCTCATTTCAATTTCAATGAACTGCCTAGAAATGCATGATTTACTACAAGAAATGGGACTGGAAATGGTTCGTGAGCAGTGTATTGAGGAGCCCGGAAAACGCAGTAGGTTATTCATTGAGGAGGATGTCTCTCATGTATTGAAGAATAATACAGGAACTGCAACAGTTGAATGCATATTCTTTAATATGTCTAAGATTAAAGAGCTACACTTGAATGCCGCAGCCTTCAAAAAGATGTATAATCTGAGAGTGCTGGAGATCTATGATTCTTCTAGCTTGGACAATAAGTGCAGCAAATTGTACCTTCCTGAAGGTCTTCAGTCTCTTCCCGATACGCTTAGTTATCTTCACTGGGAGGGATACCCTTTGAAATATTTTCCATCAAAATTTTCTCCTCAGAATCTCGTTAACATTCAAATGGCCCACAGTCAAGTCGAACAGCTTTGGAGTAAAGGCCAGAAACTTGCGAATTTAAAAGTGATTGATTTTAGCTTCTCCAAACGCCTGACTGAAATTCCAGATCTCTCCCTGAGTCGAAAAATTGAACATATAAATCTTGGTTGCTGTAAAAGTTTGGTTGAAATTCCTTCGTATTTTCAATATCTTGACAAACTTAGTTTTCTTGGGCTGAGAGGATGCTCGAATCTCAAATATCTTCCGGAGTTGCCAATCAGCATTAAAACCTTATATTTGTCAGAGACTGCAATAAGGGAATTGCCTTCATCAGTTTGGTCAAACGAAAATCTTTCTCACCTGGATATCGAATTTTGTAAAGATCTTGAGAATCTTCCAAGCTGCAGTTGCCAGCTGAAATTCCCCTTTCGGTTTAGTATAGAGGGCTGCTCATCACTTCGCAAGGTTTGGGAGCTTCCTAGGGATATACAAGAGTTATTTTTGAATGGGACAGCAATAGAAACATTGCCTTCATCAATTGAGTGTCTCTTTGGTCTTACTGAAATTGGACTGAAAGATTGCAAAAGTCTCGTCAGTCTCCCTACGAGCATATGTAAGTTGAAATGTCTTGAGGTACTTGATCTCACTGGTTGCTCTAAATTTGAATGCTTCCCAGAAATTTTGGAGCCTATGGAACATCTGAAGTTTCTTTCATTAAAGGGAACAGCAGTTAAAGAGCTACCTTCATCAATCGAATTTCTCTCTCATCTCCTAATCATTGACTTGAAAAATTGCCAAAGATTCATGAGTCTCCCGAAGAGCATTTGTAAGTTGAAATCCCTTTGGAAGCTTAACCTGAAAGAGTGCTGTAGATTCAACTGTTTCCCTGAAATCTTGGAGCCTATGGAACGTCTAGAGTTTCTTAGTTTAAGAAGGACAGCAGTTAAAGAGCTGCCCTCATCAATCGAAAATCTAATTGGGCTTGAAACATTAGATCTCCGTCTGTGCAAGAAGCTTGAGTTTGTCCCAAGCAGCATGTACAATTTAAACTGTCTTAGAACTCTCAGTTTTGATGGCTGTTCTAAACTTATAAAATTGCCTTCATCCTCATTTGGCTTGAACGATTTGGAAGAAGCAACTCTCAGTTATTCCGGTATATTAGAAATCCCTGATCGCCTCGTTTGCTTAACCTCATTACGAGGATTAGATCTAAGAGGAACCATGGTTAAGTGGATACCAGCAAGCATCAAACAAGCTTCTCGGCTGTCTTGCCTGTTGTTAAATAATTGCAAAAGCCTTCGATCTTTACCCGAGCTCCCAGGGGTACGTTGGCTGGAAGCACATGGTTGCACTTCTCTGGAGAAAGTGTCAAGTTTAAGGACTCAACTTGTACAAGGTCGTGATGATTATGAACATGGAGTTTATGGAACGATCCCCGAGAAACTTATATTTTCTGGTTGCTTGAAATTGGATGAGAATGCGCGGAACAGCATAATGGATGACGCACATCTTCGAATTTTACGAATGGCGGCGTCACACAATGTGGAATCGTTGGATGGAAATTCTTTAGTTACCATTGTATGTCCAGGAAATGAAATTCCTAATTGGTCCGGAGCTCAAAATGAGGGATCTTCGATAAATATCCGTCTTCCTCCAAATTGTTTTGGGTCAGACTTCTTGGGCTTCGTTTTCTCTCTTCTTGTTGAATTTGACAACTATAATGTTGAACAAGGATTGGAGTTCGGATGTAAATCCACACTCAAAGGGAATAGTGGTAAAAGCCATGAATTTAGCTGTCGTTTGTGTGATCGACTGTGGGGTGAAACCCAAGGTGAAGAAAGCAACGGCTACAATTTCAATTCGGACCACGTGTTTGTGTGGTATAATACATTTGACCTTGTGGGGGGAGCACAATGCTCTACTGCTCTTCACAATGGTGTCACTGAGGCATCTGTTGAGTTCTACCCCAAAGATCATCATGACAGACCGCTTAACTCATACACAGTGAAGGTAAAAAGGTGTGGCGTCCGCCTGTTGTATGCTGAAGATACTAAGTAA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.2G060400.1.p	1	"disease resistance protein (TIR-NBS-LRR class), putative"
Prunus persica	Prupe.2G060400.3.p	0.924	"disease resistance protein (TIR-NBS-LRR class), putative"
Prunus persica	Prupe.2G060400.5.p	0.733	"disease resistance protein (TIR-NBS-LRR class), putative"
Prunus persica	Prupe.2G060400.6.p	0.733	"disease resistance protein (TIR-NBS-LRR class), putative"
Pyrus communis	PCP028600.1	1	-
Pyrus x bretschneideri	Pbr039036.1	1	-

Gene Ontology

GO term	Description	Category
GO:0006952	defense response	biological_process
GO:0043531	ADP binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.18	NB-ARC	19	278	7.40E-36

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0467039
SRR5252888	dormant buds	no	dormant buds(0 month)	0.424167
SRR5252889	dormant buds	no	dormant buds(0 month)	0.38218
SRR5252886	dormant buds	no	dormant buds(1 months)	0.598688
SRR5252887	dormant buds	no	dormant buds(1 months)	0.445402
SRR5252884	dormant buds	no	dormant buds(2 months)	0.254038
SRR5252882	dormant buds	no	dormant buds(3 months)	0.101915
SRR5252883	dormant buds	no	dormant buds(3 months)	0.24987
SRR5252880	dormant buds	no	dormant buds(4 months)	0.661125
SRR5252881	dormant buds	no	dormant buds(4 months)	0.479806
SRR5252878	bud break	no	bud break	0.405231
SRR5252879	bud break	no	bud break	0.308933
SRR3744766	flower	no	mature	0.11596
SRR3744767	flower	no	mature	0.0644227
SRR3744768	flower	no	mature	0.0275918
SRR6308190	stigmas	no	open flowers	0.0817061
SRR6308181	styles	no	open flowers	0.105572
SRR6308188	filaments	no	open flowers	0.105406
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.090261
SRR6308194	sepals	no	open flowers	0.174923
SRR6308193	receptacles	no	open flowers	0.139523
SRR6308189	ovaries	no	open flowers	0.0567288
SRR3384922	fruit	no	1 week after full bloom	0.0238501
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0.0420013
SRR3384923	fruit	no	5 week after full bloom	0.0199714
SRR3384918	fruit	no	6 week after full bloom	0.0222323
SRR3384917	fruit	no	8 week after full bloom	0.0320978
SRR3384916	fruit	no	10 week after full bloom	0.145942
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0.0239245
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0.0528893
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0.0198589
SRR768128	whole fruit	no	25 days post anthesis	0
SRR768129	whole fruit	no	35 days post anthesis	0.0631982
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0.0398776
SRR7343308	immature fruit flesh	no	immature	0.28154
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.0783275
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0265305
SRR7403506	fruit	uninfected	mature	0.0140128
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0.0508777
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.0214394
SRR1613974	Central seeds	no	20DAPF	0.0294587
SRR1613975	Central seeds	no	20DAPF	0.0199974
SRR1613976	Lateral seeds	no	20DAPF	0
SRR1613977	Lateral seeds	no	20DAPF	0.00813602
SRR1613978	Lateral seeds	no	20DAPF	0.0186834
SRR3744786	stem	no	mature	0.108447
SRR3744787	stem	no	mature	0.128668
SRR3744772	stem	no	mature	0.0427782
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.109752
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0649623
SRR1089478	leaf	Virus-free	plantlets	0.0920663
SRR1089477	leaf	ASGV-infected	plantlets	0.14283
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.03722
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0.0586087
SRR3744769	leaf	no	mature	0.044421
SRR3744770	leaf	no	mature	0.0349179
SRR3744771	leaf	no	mature	0.125885
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0