Gene detail

Detail information of MD10G1138000 Annotation

Gene ID	Annotation
MD10G1138000	root hair specific 17

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0072	trans-Golgi network endosome UDP-glucuronate decarboxylase [EC:4.1.1.35] heparanase [EC:3.2.1.166] GH79 beta-glucuronidase activity dTDP-glucose 4

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1138000	mRNA	Chr10	22252865	22260794	-

Sequences

CDS:

MD10G1138000

CAAGTAGGAGCCATCATGCTTGAACGCATACGCCACCATCGTATGAGCAACACGATTGCACTCCCTCAAGGAGTTCATTGAGAATATATTTTAGTGAAAACATTCAAAAATTTCGCTAGCAAAAATCCCATTGGCTCCTTCAATTTCATCTTCATGGGTCCCAAAGCTAGAGGCCCACTCAAATGAACAACGATTATCGTAAACAGCAATCGGATGATCAGAAACGCATCATCGTTGGCACTTTGACAATTGTACCGTCTGAGCGTGTCACACAGGAACCAAACCATTAAGAATTACGCGCGCGATGGGTTTTAGGGGAGGGCCTTTTTGGTGAAGCTTGTTTGTTTTCTTGCGGGGAAGGGAAGCGAGGAGGCACAAAAACGCCGTCGTTCTGGTAGTCTCTGTCGTCGTCGCAGAAGCTTTCCAGCTTCAAATACAACGACTCTATTTCCTCCTGTTTCTTCTCTGCAACAAAGCCGCCAACGATGAAGAAGAAGAAGAGAGACGCAATCAACGGCCACAGCTGCATCAACATCACCGCCACCGCCCTCGGCGGCGTCGTTTTCAAAACCTCTGTTCTCCGGCGACACTTCCGCCGTATCCGCCACCACGTGTTCCCGCTAATCTCCGCCGTTTCCGGTTGCCTGCTCCTCTTCCTCGCCGCCTTCTCTGTCCTCGCTCCGTCGCCGGTTCTGCATCCTCATGATCACCTCTCGCTCTTGCGGCACCTCACCTCGAATGACAATGGCGACGTTGAGGTCTGGCCGAATTCGGATGAGACAACGAAGTTTCGCGTGACGGAGAGTGGGGGAAGTTCAGGTCGAGATTTATGGAGTACAAGGGAATCGGAGCTTTTCTATAGCTGCAGCAATGCCGCCGATAACTTTGCAAGTAAACCGTCTGCTGATGCGAAAACTCATTCGAATCGCTACTTGTTGATTGCTACTAGTGGAGGATTGAACCAACAAAGAACAGGGATAACAGATGCTGTCGTTGCAGCTTATATCTTGAACGCTACTCTTGTTGTTCCCAAGCTGGACCAGAAATCGTATTGGAAGGATTCCAGCAACTTCGATGAAATCTTTGATGTAGACTGGTTTATATCATCTCTCTCGAAGGATGTTAAAATCATTAAAGAGCTTCCAACAAAGGGAGGGAAACCAATGAGTGTGCATACCACGCGAGTCCCAAGGAAGTGTAATGAAAAATGTTACCAGAACCGCTTGGTGCCCATTCTTAATAAAAAGCATGCTGTTCAGCTCACAAAATTTGATTACAGACTTTCAAATAGGCTGGATTCAGATTTACAAAAGCTGAGATGTAGAGCCAATTATCAAGCCTTGAAATTTACCGACACGATTAGTGAAATGGGTAAAAAGTTGGTTGAGAGAATGAGAATGAAAAGCAAGCATTTCATTGCCCTGCATCTGAGGTTTGAGCCTGATATGCTGGCGTTTTCTGGATGCGATTATGGTGGGGGAGAAAAGGAAAGGAAAGAACTTGGCAAACTTCGGAAAAGGTGGAAAACTTTACATGCAAGCAACCCTGACAAGGTACGAAGACATGGCAGATGCCCGCTAACTCCAGAGGAAGTTGGTCTCATGCTTAGAGCGCTGGGTTTCGGAAGTGATATTCACTTGTATGTGGCATCCGGTGAAGTATATGGAGGTGAAGAGACAATGGCACCACTAAAAGCACTTTTCCCAAACTTCCACACAAAAGAGACTTTATTAAGTAAGAAGGAGTTGGCACCATTTTCATCCTTCTCTTCTCGAATGGCTGCACTGGACTTCGTTGTTTGCGATGAAAGTGATGTTTTCATCACCAACAACAATGGCAATATGGCTAAAATGTTAGCTGGTCGAAGGAGATACTTTGGTCACAAACCAACAATCCGTCCAAATGCTAAGAAATTGTCTCCGTTGTTCATAAATCGTAATAACATGACATGGGAAGAATTTGCATCGAGGCTTCGAACAAGTCAAATTGGATTCATGGGAGAGCCAAATGAGATAAAGCTCGGCAGGGGTGAGTTCCACGAAAACCCAGCAGCTTGCATTTGTAGCGCATCTAACACAAAGGCTAAGGAAGTTCCAATTCCTCAAAATGAAAGTCCCGATATCCTTAAAATAGATAAGGAGGATTATACGAACAAGGACAGTGGTTATGTGACAGATGAGCAAGTAACTGAGGACGAGCAAGATTGGTCTGAGGCGGATTATACTGAAATTGCAAATCGGTCTCTAGGGAAAGTGCTGCCTAGCGTAAGAGTTTCAGATCCAAGTCTTCTACTTAAGTCCGACCAACCAGAACTCGACGAATTCTTTTCAGACTGAAGTTTGACGACAGGATTTCCAATTTTGGCAAGTTAGCAGTTTTGTCTTAGCAAGCTCTTCACCAAATTCTTTGGGTCTTTCTGTCGCCCGTTTTGATAGGTTACTTACATGGATGAGAATGATTTATACAATTGGATTGGCCGTAACAAAAAACCACATTGTACATACAGGCTTCAGCTGATGGCAGGCTATACAGGACTATTCAGATTTTGAACCTTGTACAGTGGTTCGTGCTAAGGACAACATCGTGTTTTCTTCTTTGATGATTCTTTCCGTAAGGCAGGAACGTATATACGACGGAGATACGAGGGTTTAGGGTTTAGGGTGTGGTTATTGTAGGCGCAGAATTCAGGCTTTACTCTCTCTTAAATCTTTCTTCAGTTTCTGATGCGTCATCTTCTGTTGTATGCATGGAATTCTTCAACTCTCTTTCTCCTTCACTCCAATTTTTCAATCTCTTGTTTGGTTGTGGTTGTTGGAACTTGGAAAGAAAACTCTTAAATGTATTTGAGGAAGGCAAGTTGAAGGAATGCCAACGTATTCACCTTTTTAAATTGGCTCTACAACTCGCAATTACAAAGTACAGACAC

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GTnc

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.8G176500.1.p	1	root hair specific 17
Pyrus communis	PCP021388.1	1	-
Pyrus x bretschneideri	Pbr038053.1	1	-
Pyrus x bretschneideri	Pbr037224.1	0.784	-
Pyrus x bretschneideri	Pbr037233.1	0.784	-
Rubus occidentalis	Ro02_G18374	1	-
Fragaria vesca	mrna17084.1	1	O-fucosyltransferase family protein
Vitis vinifera	GSVIVT01023934001	1	O-fucosyltransferase family protein
Populus trichocarpa	Potri.004G183200.1	1	O-fucosyltransferase family protein
Nicotiana benthamiana	Niben101Scf04294g00011.1	1	O-fucosyltransferase family protein LENGTH=564
Nicotiana benthamiana	Niben101Scf06357g01003.1	0.848	O-fucosyltransferase family protein LENGTH=564
Zea mays	GRMZM2G142664_P01	1	Auxin-independent growth promoter;

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.175262
SRR5252888	dormant buds	no	dormant buds(0 month)	0.816176
SRR5252889	dormant buds	no	dormant buds(0 month)	0.441232
SRR5252886	dormant buds	no	dormant buds(1 months)	0.345597
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0734602
SRR5252884	dormant buds	no	dormant buds(2 months)	0.351948
SRR5252882	dormant buds	no	dormant buds(3 months)	0.117662
SRR5252883	dormant buds	no	dormant buds(3 months)	0.0320531
SRR5252880	dormant buds	no	dormant buds(4 months)	0.410995
SRR5252881	dormant buds	no	dormant buds(4 months)	0.391018
SRR5252878	bud break	no	bud break	0.760246
SRR5252879	bud break	no	bud break	0.291818
SRR3744766	flower	no	mature	1.70635
SRR3744767	flower	no	mature	1.99039
SRR3744768	flower	no	mature	1.76703
SRR6308190	stigmas	no	open flowers	39.5223
SRR6308181	styles	no	open flowers	21.5014
SRR6308188	filaments	no	open flowers	5.10551
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	12.8208
SRR6308192	pollen	no	open flowers	117.608
SRR6308191	petals	no	open flowers	0.884567
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	7.60081
SRR6308189	ovaries	no	open flowers	5.13394
SRR3384922	fruit	no	1 week after full bloom	0.192749
SRR3384921	fruit	no	2 week after full bloom	0.327861
SRR3384920	fruit	no	3 week after full bloom	0.157466
SRR3384919	fruit	no	4 week after full bloom	0.193967
SRR3384923	fruit	no	5 week after full bloom	0.322807
SRR3384918	fruit	no	6 week after full bloom	0.282347
SRR3384917	fruit	no	8 week after full bloom	0.222347
SRR3384916	fruit	no	10 week after full bloom	0.4092
SRR3384915	fruit	no	12 week after full bloom	1.39552
SRR3384914	fruit	no	14 week after full bloom	0.386702
SRR3384913	fruit	no	16 week after full bloom	0.227735
SRR3384912	fruit	no	18 week after full bloom	0.915933
SRR3384911	fruit	no	19 week after full bloom	0.20498
SRR3384910	fruit	no	20 week after full bloom	0.504409
SRR768128	whole fruit	no	25 days post anthesis	0.597803
SRR768129	whole fruit	no	35 days post anthesis	0.510593
SRR768130	whole fruit	no	60 days post anthesis	1.16179
SRR768131	whole fruit	no	87 days post anthesis	0.55231
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0.162103
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.814313
SRR6320572	ripe fruit peel	no	mature	1.22693
SRR7403504	fruit	uninfected	mature	3.91981
SRR7403506	fruit	uninfected	mature	3.80104
SRR7403507	fruit	uninfected	mature	3.70649
SRR7403500	fruit	infected with penicillium expansum	mature	5.18419
SRR7403501	fruit	infected with penicillium expansum	mature	5.40287
SRR7403508	fruit	infected with penicillium expansum	mature	5.24963
SRR7403502	fruit	infected with penicillium expansum	mature	2.5858
SRR7403503	fruit	infected with penicillium expansum	mature	2.88814
SRR7403505	fruit	infected with penicillium expansum	mature	2.7604
SRR1613973	Central seeds	no	20DAPF	1.60807
SRR1613974	Central seeds	no	20DAPF	1.56936
SRR1613975	Central seeds	no	20DAPF	1.71529
SRR1613976	Lateral seeds	no	20DAPF	1.74762
SRR1613977	Lateral seeds	no	20DAPF	1.62889
SRR1613978	Lateral seeds	no	20DAPF	2.02657
SRR3744786	stem	no	mature	0.175541
SRR3744787	stem	no	mature	0.223166
SRR3744772	stem	no	mature	0.160757
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.467582
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.214071
SRR1089478	leaf	Virus-free	plantlets	0.0531187
SRR1089477	leaf	ASGV-infected	plantlets	0.0824073
SRR767660	leaf	uninfected	fully developed	0.323452
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.156629
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.140639
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.343618
SRR6308182	young leaf	no	immature leaves	0.304067
SRR3744769	leaf	no	mature	0.154039
SRR3744770	leaf	no	mature	0.0807673
SRR3744771	leaf	no	mature	0.079429
SRR5405145	leaf	no	mature	0.0943668
SRR6320561	leaf	no	mature	0