Gene detail

Detail information of MD10G1145600 Annotation

Gene ID	Annotation
MD10G1145600	Nucleotide-sugar transporter family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1145600	mRNA	Chr10	23211047	23213466	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transporter family	DMT

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G76670.1	1	Nucleotide-sugar transporter family protein
Arabidopsis thaliana	AT1G21070.1	0.627	Nucleotide-sugar transporter family protein
Prunus persica	Prupe.8G184100.1.p	1	Nucleotide-sugar transporter family protein
Pyrus communis	PCP031443.1	1	-
Rosa multiflora	Rmu_ssc0000126.1_g000047.1	1	-
Rubus occidentalis	Ro05_G19382	1	-
Fragaria vesca	mrna17129.1	1	Nucleotide-sugar transporter family protein
Vitis vinifera	GSVIVT01013474001	1	Nucleotide-sugar transporter family protein
Populus trichocarpa	Potri.002G000500.1	1	Nucleotide-sugar transporter family protein
Populus trichocarpa	Potri.005G260300.1	0.702	Nucleotide-sugar transporter family protein
Nicotiana benthamiana	Niben101Scf05047g03009.1	1	Nucleotide-sugar transporter family protein LENGTH=350
Oryza sativa	LOC_Os07g39280.1	1	"transporter-related, putative, expressed"
Zea mays	GRMZM2G055216_P01	1	-

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	19.7553
SRR5252888	dormant buds	no	dormant buds(0 month)	8.21123
SRR5252889	dormant buds	no	dormant buds(0 month)	8.34749
SRR5252886	dormant buds	no	dormant buds(1 months)	11.9208
SRR5252887	dormant buds	no	dormant buds(1 months)	21.87
SRR5252884	dormant buds	no	dormant buds(2 months)	13.1275
SRR5252882	dormant buds	no	dormant buds(3 months)	10.5088
SRR5252883	dormant buds	no	dormant buds(3 months)	18.427
SRR5252880	dormant buds	no	dormant buds(4 months)	8.07683
SRR5252881	dormant buds	no	dormant buds(4 months)	10.2361
SRR5252878	bud break	no	bud break	5.76342
SRR5252879	bud break	no	bud break	5.79185
SRR3744766	flower	no	mature	62.2422
SRR3744767	flower	no	mature	58.3422
SRR3744768	flower	no	mature	57.8015
SRR6308190	stigmas	no	open flowers	175.463
SRR6308181	styles	no	open flowers	75.7595
SRR6308188	filaments	no	open flowers	97.2504
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	113.55
SRR6308192	pollen	no	open flowers	183.014
SRR6308191	petals	no	open flowers	90.1706
SRR6308194	sepals	no	open flowers	47.6409
SRR6308193	receptacles	no	open flowers	23.1226
SRR6308189	ovaries	no	open flowers	51.1229
SRR3384922	fruit	no	1 week after full bloom	40.3144
SRR3384921	fruit	no	2 week after full bloom	37.1503
SRR3384920	fruit	no	3 week after full bloom	20.3706
SRR3384919	fruit	no	4 week after full bloom	47.1979
SRR3384923	fruit	no	5 week after full bloom	40.2448
SRR3384918	fruit	no	6 week after full bloom	66.516
SRR3384917	fruit	no	8 week after full bloom	40.863
SRR3384916	fruit	no	10 week after full bloom	38.5035
SRR3384915	fruit	no	12 week after full bloom	34.6794
SRR3384914	fruit	no	14 week after full bloom	37.6044
SRR3384913	fruit	no	16 week after full bloom	52.9763
SRR3384912	fruit	no	18 week after full bloom	47.2078
SRR3384911	fruit	no	19 week after full bloom	61.3927
SRR3384910	fruit	no	20 week after full bloom	65.6296
SRR768128	whole fruit	no	25 days post anthesis	14.1509
SRR768129	whole fruit	no	35 days post anthesis	37.1312
SRR768130	whole fruit	no	60 days post anthesis	49.6027
SRR768131	whole fruit	no	87 days post anthesis	81.6497
SRR7343308	immature fruit flesh	no	immature	26.3922
SRR7343309	immature fruit flesh	no	immature	27.3387
SRR6320494	ripe fruit flesh	no	mature	37.681
SRR5405143	ripe fruit peel	no	mature	32.2764
SRR6320572	ripe fruit peel	no	mature	22.9632
SRR7403504	fruit	uninfected	mature	28.2486
SRR7403506	fruit	uninfected	mature	28.3484
SRR7403507	fruit	uninfected	mature	28.305
SRR7403500	fruit	infected with penicillium expansum	mature	143.992
SRR7403501	fruit	infected with penicillium expansum	mature	162.517
SRR7403508	fruit	infected with penicillium expansum	mature	156.036
SRR7403502	fruit	infected with penicillium expansum	mature	113.929
SRR7403503	fruit	infected with penicillium expansum	mature	105.142
SRR7403505	fruit	infected with penicillium expansum	mature	108.118
SRR1613973	Central seeds	no	20DAPF	71.0847
SRR1613974	Central seeds	no	20DAPF	65.0695
SRR1613975	Central seeds	no	20DAPF	63.8969
SRR1613976	Lateral seeds	no	20DAPF	54.1065
SRR1613977	Lateral seeds	no	20DAPF	55.363
SRR1613978	Lateral seeds	no	20DAPF	57.817
SRR3744786	stem	no	mature	16.4071
SRR3744787	stem	no	mature	16.8262
SRR3744772	stem	no	mature	16.9619
SRX765691	seedling shoot apex	no	4-6 week old seedling	12.2918
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	11.5785
SRR1089478	leaf	Virus-free	plantlets	15.7508
SRR1089477	leaf	ASGV-infected	plantlets	11.7964
SRR767660	leaf	uninfected	fully developed	22.4756
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	9.01226
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	29.2217
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	49.8151
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	1.37895
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	17.0517
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	13.991
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	17.56
SRR6308182	young leaf	no	immature leaves	23.6041
SRR3744769	leaf	no	mature	19.9033
SRR3744770	leaf	no	mature	19.3925
SRR3744771	leaf	no	mature	21.0625
SRR5405145	leaf	no	mature	15.6696
SRR6320561	leaf	no	mature	22.7649