Gene ID | Annotation |
---|---|
MD10G1154500 | 40s ribosomal protein SA |
Network Category | Global Network | Conditional network (different tissues and developmental stages) |
---|---|---|
Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
Method | Module ID | Function Annotation |
---|---|---|
Co-expression network | CFinderM0317 | structural constituent of ribosome translation small subunit ribosomal protein SAe endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA 90S preribosome cytosolic large ribosomal subunit ribosomal small subunit assembly ribosome biogenesis rRNA export from nucleus RNA methylation Unknown Function Kinase vacuolar membrane cytosolic small ribosomal subunit protein import into nucleus large subunit ribosomal protein L18Ae mitochondrial import receptor subunit TOM40 large subunit ribosomal protein L19e large subunit ribosomal protein L7Ae mitochondrial outer membrane translocase complex voltage-gated anion channel activity regulation of anion transport |
more details in UCSC | details of chromatin state |
Gene | Type | Chr | Start | End | Strand |
---|---|---|---|---|---|
MD10G1154500 | mRNA | Chr10 | 24223202 | 24225620 | + |
CDS: |
MD10G1154500 |
Protein: |
MD10G1154500 |
Gene family | Subfamily |
---|---|
-- | -- |
Species | Gene ID | Score of Inparanoid | Annotation |
---|---|---|---|
Arabidopsis thaliana | AT1G72370.1 | 1 | AP40;P40;RP40;RPSAA|40s ribosomal protein SA |
Arabidopsis thaliana | AT1G72370.2 | 0.926 | AP40;P40;RP40;RPSAA|40s ribosomal protein SA |
Prunus persica | Prupe.3G034600.1.p | 1 | 40s ribosomal protein SA B |
Prunus persica | Prupe.8G193400.1.p | 1 | 40s ribosomal protein SA B |
Prunus persica | Prupe.8G193400.2.p | 0.945 | 40s ribosomal protein SA B |
Rosa multiflora | Rmu_sc0001880.1_g000034.1 | 1 | - |
Rubus occidentalis | Ro05_G27472 | 1 | - |
Fragaria vesca | mrna05419.1 | 1 | 40s ribosomal protein SA B |
Populus trichocarpa | Potri.015G112900.3 | 1 | 40s ribosomal protein SA |
Populus trichocarpa | Potri.003G071200.1 | 1 | 40s ribosomal protein SA B |
Populus trichocarpa | Potri.001G164000.1 | 0.7 | 40s ribosomal protein SA |
GO term | Description | Category |
---|---|---|
GO:0015935 | small ribosomal subunit | cellular component |
GO:0003735 | structural constituent of ribosome | molecular_function |
GO:0006412 | translation | biological_process |
KO | Description | Enzyme |
---|---|---|
K02998 | small subunit ribosomal protein SAe | - |
Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|
-- | -- | -- | -- | -- |