Detail information of MD10G1154500 Annotation
Gene IDAnnotation
MD10G115450040s ribosomal protein SA

Network
Network CategoryGlobal NetworkConditional network
(different tissues and developmental stages)
Coexpression PositiveTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelist

Functional module
MethodModule IDFunction Annotation
Co-expression networkCFinderM0317structural constituent of ribosome
translation
small subunit ribosomal protein SAe
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA
90S preribosome
cytosolic large ribosomal subunit
ribosomal small subunit assembly
ribosome biogenesis
rRNA export from nucleus
RNA methylation
Unknown Function Kinase
vacuolar membrane
cytosolic small ribosomal subunit
protein import into nucleus
large subunit ribosomal protein L18Ae
mitochondrial import receptor subunit TOM40
large subunit ribosomal protein L19e
large subunit ribosomal protein L7Ae
mitochondrial outer membrane translocase complex
voltage-gated anion channel activity
regulation of anion transport

Gene structure and chromatin state
more details in UCSCdetails of chromatin state

Location
GeneTypeChrStartEndStrand
MD10G1154500mRNAChr102422320224225620+

Sequences
CDS:
Protein:

Gene family
Gene familySubfamily
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Orthologous genes
SpeciesGene IDScore of InparanoidAnnotation
Arabidopsis thalianaAT1G72370.11AP40;P40;RP40;RPSAA|40s ribosomal protein SA
Arabidopsis thalianaAT1G72370.20.926AP40;P40;RP40;RPSAA|40s ribosomal protein SA
Prunus persicaPrupe.3G034600.1.p140s ribosomal protein SA B
Prunus persicaPrupe.8G193400.1.p140s ribosomal protein SA B
Prunus persicaPrupe.8G193400.2.p0.94540s ribosomal protein SA B
Rosa multifloraRmu_sc0001880.1_g000034.11-
Rubus occidentalisRo05_G274721-
Fragaria vescamrna05419.1140s ribosomal protein SA B
Populus trichocarpaPotri.015G112900.3140s ribosomal protein SA
Populus trichocarpaPotri.003G071200.1140s ribosomal protein SA B
Populus trichocarpaPotri.001G164000.10.740s ribosomal protein SA

Gene Ontology
GO termDescriptionCategory
GO:0015935small ribosomal subunitcellular component
GO:0003735structural constituent of ribosomemolecular_function
GO:0006412translationbiological_process

KEGG
KODescriptionEnzyme
K02998small subunit ribosomal protein SAe-

Pfam domain
Pfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern
Created with Highcharts 5.0.4Chart context menuExpression pattern for MD10G1154500.whole_seedling_SRR768136dormant_buds_0month_SRR5252888dormant_buds_0month_SRR5252889dormant_buds_1months_SRR5252886dormant_buds_1months_SRR5252887dormant_buds_2months_SRR5252884dormant_buds_3months_SRR5252882dormant_buds_3months_SRR5252883dormant_buds_4months_SRR5252880dormant_buds_4months_SRR5252881bud_break_SRR5252878bud_break_SRR5252879flower_SRR3744766flower_SRR3744767flower_SRR3744768stigmas_SRR6308190styles_SRR6308181filaments_SRR6308188anthers_SRR6308187pollen_SRR6308192petals_SRR6308191sepals_SRR6308194receptacles_SRR6308193ovaries_SRR6308189fruit_1WAFB_SRR3384922fruit_2WAFB_SRR3384921fruit_3WAFB_SRR3384920fruit_4WAFB_SRR3384919fruit_5WAFB_SRR3384923fruit_6WAFB_SRR3384918fruit_8WAFB_SRR3384917fruit_10WAFB_SRR3384916fruit_12WAFB_SRR3384915fruit_14WAFB_SRR3384914fruit_16WAFB_SRR3384913fruit_18WAFB_SRR3384912fruit_19WAFB_SRR3384911fruit_20WAFB_SRR3384910whole_fruit_25DPA_SRR768128whole_fruit_35DPA_SRR768129whole_fruit_60DPA_SRR768130whole_fruit_87DPA_SRR768131immature_fruit_flesh_SRR7343308immature_fruit_flesh_SRR7343309ripe_fruit_flesh_SRR6320494ripe_fruit_peel_SRR5405143ripe_fruit_peel_SRR6320572fruit_control_uninfected_SRR7403504fruit_control_uninfected_SRR7403506fruit_control_uninfected_SRR7403507fruit_PhleoR_penicillium_expansum_SRR7403500fruit_PhleoR_penicillium_expansum_SRR7403501fruit_PhleoR_penicillium_expansum_SRR7403508fruit_creA_penicillium_expansum_SRR7403502fruit_creA_penicillium_expansum_SRR7403503fruit_creA_penicillium_expansum_SRR7403505Central_seeds_SRR1613973Central_seeds_SRR1613974Central_seeds_SRR1613975Lateral_seeds_SRR1613976Lateral_seeds_SRR1613977Lateral_seeds_SRR1613978stem_SRR3744786stem_SRR3744787stem_SRR3744772seedling_shoot_apex_SRX765691tree_shoot_apex_SRX765683leaf_uninfected_SRR1089478leaf_ASGV_infected_SRR1089477leaf_uninfected_SRR767660leaf_2days_post_Venturia_inaequalis_SRR767669leaf_4days_post_Venturia_inaequalis_SRR767670leaf_6days_post_Venturia_inaequalis_SRR767671leaf_8days_post_Venturia_inaequalis_SRR767672leaf_10days_post_Venturia_inaequalis_SRR7676…leaf_10days_post_Venturia_inaequalis_SRR767673leaf_12days_post_Venturia_inaequalis_SRR7676…leaf_12days_post_Venturia_inaequalis_SRR767674leaf_14days_post_Venturia_inaequalis_SRR7681…leaf_14days_post_Venturia_inaequalis_SRR768127young_leaves_SRR6308182leaf_SRR3744769leaf_SRR3744770leaf_SRR3744771leaf_SRR5405145leaf_SRR63205610102030405060708090100110Highcharts.com
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