Gene detail

Detail information of MD10G1160200 Annotation

Gene ID	Annotation
MD10G1160200	Vacuolar iron transporter (VIT) family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0307	T-complex protein 1 subunit zeta

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1160200	mRNA	Chr10	25097980	25101859	-

Sequences

CDS:

MD10G1160200

TACATACTGACTTCATCTAGCAACCCAAATCAAAATCTCTGAATTCTAGCACATTACAGCATTCCTAACCTACAATGTCATAACTTCACACTTTTCCGGTGATAATATAGAATACTGATCACACTCAGCCTCAGAGCTTCCTTCAGAGCAAGGCAATTGGTTGAAAAAATGGAGGCAATGAACAAGTGGGAGGAGGAGACAGAGGAAGCAGCAGCTGCAGGCATGGCTCTGAGAAGAAAGCTGCCGCGCCAGCACAGCAACACAGCAAATCTCACCACCACTGTCTCCAACGGTGACTTTATCTTTTCTTCCTCTGAGAGTTCATTAGCTTCTACTGAAGCTGACGAGGCTGAGGAAGTTAAGGAAACCCCAAGAAATGGAGCTTCCATCTCTCTTAAAAATGGAGGTACTGAATCCCCATATGAGATCTCTGGTTTCAACGGCAGACATGTCGATTTTTCTTTCAGGAAAAACCCTGGAGATGAAATACCGGATGTCAAGCTAACCTTTGATAAGAGTGCTGTTGGTGTTACTAATCGCGAAGATGGTGGTGATATAAAGATTGAAGAAGAGTTCAATGGTTTTGGTACTTTATCCTCCAAGAAGTCAGTTGAGCAGAAGGGTGAAGAGTTGAATGGTTTTGCTTCTATCAACGGTGGGACGAATGAAAATAGGAGAGTTAAGCTAAGAGAAATCAGTGAACAAGAAGCGTCTGAATTGTTTCTAGAAAGGGTATATCAGAAGCCGGCCGCGCATGATTTCTATTGTCCTAATTGCAATTCTTGCATCACAAAGGTTATCATTCGTGGTAGAGAGCCAGAAAATACACTACCTCCAGCTGCACCACCTCCTCCGCCAGTTGATCCAATTCGATGCACTTCGTGCTTCAGTTTCCTCATTCCTGCAGGCAGCTGGTTCTTTCCTAAATTGGTACCTAAAGATGAGGACGATCATACAGAACAAGAAACCAATACTGGAAACAATGTTGAAGTTGGAGAGTTGGTTCCAATTCCATCACATGACTCGGCTGGAACACCACAAGATCAAAATATACAAACTGCACCAGTAAGTAAAGGTCCAGCGGCTAAAGATCCTGTTGGAGCTACTGTACCTGCAATAGTTGAACCCTCAAAAGATAATATTCAGAGCAGTGTTGGAGTCGAAGTTCCAGTTCCATCATACAGCTTGAATGAAACGCAATATGATAAAAGTCCCACGATGCCTGCTCAGCCAACTGGAGTTAGTGATGCTGCCTCGATGGATAAACCTCCAGTAACTGGTGAGTCTGTTGAAGCTAGTGTTGGAATTGCTGCAACAACTAAACCCTCCAAAAATAATTTTGAGAGCAGTGTCGAAGTTGACGAATCAGTTACTTCAGAAGAGTGGAATGGAACAGTACATAATAAAAAACCTTCAGTTCCTGTTCTGCCAATTGGAGTTGGTGTACTTGTGACCACCAAGCCCCCACCATCTGAAATAGATGTTGTAGCCATTCCGCGAGACCCCGCACAAATTCAAGGAAATGATGCAGGGCCAACTACATCTGAGCTTCCTGAGAGTAGGATAGTCGTTATTAGTCCAGAACCACCAACGATACCTGAAACAGGGGAAACAGGTGATACCAAAACGTTAGAAATCATCAAAAGCATTGTATACGGCGGTTTAACTGAAGCAATTACAAGCTTAGGCATCGTGACATCTGCAGCCAGTGCTGATACTGCAACACTGAACATTCTAGCTTTGGCATTGGCAAACTTACTTGGCGGACTTTTCATCATTGGTCATAATCTGTGGGAACTGAAAGATGATCATTCAAAAGTCCCCTCCGGTCAGACAGATGAGCAAGTGGAGAGATACCAAAAAGTACTAGGGAAAAGAGAGAATTTCCCTCTTCATGCCTCTGTTGCTGTATTATCATTCATCGTTTTCGGGTTAATACCTCCTGTGGTTTATGGCTTCTCATTCCGCCAGAGCAACAACAGGGACCTAAAGGTTGCAGCAGTTGCAGTAGCTTCTTTTCTATGCATCATAGTTCTCGCAATTGGAAAGGCTTGCATCCAGAGGCCACCAAAGTACATCAAAACTTTACTCTACTATATTACCATCGCGATTGCGGTGGGAGGTGTTTCTTATTTAGCAGGTGACCTGATTGACAAACTCGTAGAGAAGCTTGGCTGGTTCTCCTCAACTGTATCCAGCTCTCTGCCGCTTCCTCAGATGAGCATAGCGAAGCCTGCACTGGAATCCTATTGATACGATGCGGTCTCAACAAGAGATTTTTTTGTAGTTTTTCCTTGGAGCATTGTCCTAGCGCGGCAACAATTATCATCGGCATTTAGTTTTCTAAATAAATTGGTTGAATTTTTCCCCCAGCTGTTCTTTAGTAATATTTCTTATAGCTTTGGGAGTCCTAATTTCTGATCAAAGCCAATGTACTGAATAAAATCGTTAACGTTTTCAGAGTTATGCATGCCATGGTCCAGGCTCATTCGCAGTAATGATCATCTTTGTTAATTC

Protein:

Gene family

Gene family	Subfamily
Transporter family	VIT

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G27870.1	1	Vacuolar iron transporter (VIT) family protein
Prunus persica	Prupe.8G199300.1.p	1	Vacuolar iron transporter (VIT) family protein
Pyrus communis	PCP031225.1	1	-
Pyrus x bretschneideri	Pbr025463.1	1	-
Rosa multiflora	Rmu_sc0003778.1_g000035.1	1	-
Rubus occidentalis	Ro02_G26722	1	-
Fragaria vesca	mrna17574.1	1	Vacuolar iron transporter (VIT) family protein
Vitis vinifera	GSVIVT01005227001	1	Vacuolar iron transporter (VIT) family protein
Vitis vinifera	GSVIVT01005224001	1	vacuolar iron transporter (VIT) family protein
Populus trichocarpa	Potri.001G127900.1	1	Vacuolar iron transporter (VIT) family protein
Populus trichocarpa	Potri.015G000100.1	1	Vacuolar iron transporter (VIT) family protein
Populus trichocarpa	Potri.012G004000.1	0.653	Vacuolar iron transporter (VIT) family protein
Nicotiana benthamiana	Niben101Scf04231g01025.1	1	vacuolar iron transporter-like protein [Medicago truncatula]
Oryza sativa	LOC_Os06g01440.1	1	"integral membrane protein, putative, expressed"
Zea mays	GRMZM2G463462_P01	1	-

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.23928
SRR5252888	dormant buds	no	dormant buds(0 month)	4.22902
SRR5252889	dormant buds	no	dormant buds(0 month)	4.34237
SRR5252886	dormant buds	no	dormant buds(1 months)	4.15119
SRR5252887	dormant buds	no	dormant buds(1 months)	2.85476
SRR5252884	dormant buds	no	dormant buds(2 months)	2.21045
SRR5252882	dormant buds	no	dormant buds(3 months)	2.7712
SRR5252883	dormant buds	no	dormant buds(3 months)	2.34026
SRR5252880	dormant buds	no	dormant buds(4 months)	4.56336
SRR5252881	dormant buds	no	dormant buds(4 months)	4.25933
SRR5252878	bud break	no	bud break	6.47353
SRR5252879	bud break	no	bud break	9.92764
SRR3744766	flower	no	mature	0.963495
SRR3744767	flower	no	mature	0.866873
SRR3744768	flower	no	mature	0.842648
SRR6308190	stigmas	no	open flowers	0.276907
SRR6308181	styles	no	open flowers	0.90595
SRR6308188	filaments	no	open flowers	3.43064
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.295472
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	2.32429
SRR6308194	sepals	no	open flowers	2.3116
SRR6308193	receptacles	no	open flowers	2.41099
SRR6308189	ovaries	no	open flowers	2.69048
SRR3384922	fruit	no	1 week after full bloom	2.30231
SRR3384921	fruit	no	2 week after full bloom	2.87821
SRR3384920	fruit	no	3 week after full bloom	1.978
SRR3384919	fruit	no	4 week after full bloom	1.19922
SRR3384923	fruit	no	5 week after full bloom	1.24906
SRR3384918	fruit	no	6 week after full bloom	0.604548
SRR3384917	fruit	no	8 week after full bloom	0.305484
SRR3384916	fruit	no	10 week after full bloom	0.396849
SRR3384915	fruit	no	12 week after full bloom	0.402469
SRR3384914	fruit	no	14 week after full bloom	0.35781
SRR3384913	fruit	no	16 week after full bloom	0.153251
SRR3384912	fruit	no	18 week after full bloom	0.467409
SRR3384911	fruit	no	19 week after full bloom	0.482784
SRR3384910	fruit	no	20 week after full bloom	0.270005
SRR768128	whole fruit	no	25 days post anthesis	3.67493
SRR768129	whole fruit	no	35 days post anthesis	2.31833
SRR768130	whole fruit	no	60 days post anthesis	0.863756
SRR768131	whole fruit	no	87 days post anthesis	0.595977
SRR7343308	immature fruit flesh	no	immature	3.63747
SRR7343309	immature fruit flesh	no	immature	1.33665
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.213253
SRR6320572	ripe fruit peel	no	mature	0.160222
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0.605672
SRR7403501	fruit	infected with penicillium expansum	mature	0.483971
SRR7403508	fruit	infected with penicillium expansum	mature	0.697782
SRR7403502	fruit	infected with penicillium expansum	mature	0.732161
SRR7403503	fruit	infected with penicillium expansum	mature	0.989927
SRR7403505	fruit	infected with penicillium expansum	mature	1.04458
SRR1613973	Central seeds	no	20DAPF	10.0347
SRR1613974	Central seeds	no	20DAPF	11.5212
SRR1613975	Central seeds	no	20DAPF	9.09725
SRR1613976	Lateral seeds	no	20DAPF	8.66934
SRR1613977	Lateral seeds	no	20DAPF	8.83881
SRR1613978	Lateral seeds	no	20DAPF	10.2163
SRR3744786	stem	no	mature	0.79889
SRR3744787	stem	no	mature	0.672983
SRR3744772	stem	no	mature	0.7296
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.20233
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.0137
SRR1089478	leaf	Virus-free	plantlets	3.12555
SRR1089477	leaf	ASGV-infected	plantlets	2.32748
SRR767660	leaf	uninfected	fully developed	1.33211
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	3.61354
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.42713
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.992441
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.31017
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.18348
SRR6308182	young leaf	no	immature leaves	11.5961
SRR3744769	leaf	no	mature	0.469366
SRR3744770	leaf	no	mature	0.587892
SRR3744771	leaf	no	mature	0.437639
SRR5405145	leaf	no	mature	0.999886
SRR6320561	leaf	no	mature	0.656892