Gene detail

Detail information of MD10G1210900 Annotation

Gene ID	Annotation
MD10G1210900	glyceraldehyde-3-phosphate dehydrogenase of plastid 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0624	GT68 peptide-O-fucosyltransferase [EC:2.4.1.221] adenosylhomocysteinase [EC:3.3.1.1] trans-Golgi network endosome UDP-glucuronate decarboxylase [EC:4.1.1.35] glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity UDP-glucuronate decarboxylase activity FGP

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1210900	mRNA	Chr10	31026649	31030685	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G79530.1	1	GAPCP-1\|glyceraldehyde-3-phosphate dehydrogenase of plastid 1
Pyrus x bretschneideri	Pbr006059.2	1	-
Rosa multiflora	Rmu_sc0026565.1_g000003.1	1	-
Rubus occidentalis	Ro03_G32935	1	-
Fragaria vesca	mrna18492.1	1	glyceraldehyde-3-phosphate dehydrogenase of plastid 1
Vitis vinifera	GSVIVT01036751001	1	glyceraldehyde-3-phosphate dehydrogenase of plastid 2
Solanum lycopersicum	Solyc10g005510.2.1	1	glyceraldehyde-3-phosphate dehydrogenase of plastid 2
Populus trichocarpa	Potri.008G083900.1	1	glyceraldehyde-3-phosphate dehydrogenase of plastid 2
Populus trichocarpa	Potri.010G172400.1	0.675	glyceraldehyde-3-phosphate dehydrogenase of plastid 2
Nicotiana benthamiana	Niben101Scf12280g01013.1	1	Glyceraldehyde-3-phosphate dehydrogenase
Oryza sativa	LOC_Os02g07490.1	1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"
Oryza sativa	LOC_Os06g45590.1	1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"
Zea mays	GRMZM2G104632_P01	1	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic "
Zea mays	GRMZM2G051004_P01	0.724	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic; "

Gene Ontology

GO term	Description	Category
GO:0051287	NAD binding	molecular_function
GO:0050661	NADP binding	molecular_function
GO:0055114	oxidation-reduction process	biological_process
GO:0006006	glucose metabolic process	biological_process

KEGG

KO	Description	Enzyme
K00134	glyceraldehyde 3-phosphate dehydrogenase	EC:1.2.1.12

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00044.20	Gp_dh_N	95	243	4.10E-58
PF02800.16	Gp_dh_C	248	405	7.50E-69

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.48102
SRR5252888	dormant buds	no	dormant buds(0 month)	26.7764
SRR5252889	dormant buds	no	dormant buds(0 month)	32.4266
SRR5252886	dormant buds	no	dormant buds(1 months)	40.722
SRR5252887	dormant buds	no	dormant buds(1 months)	48.579
SRR5252884	dormant buds	no	dormant buds(2 months)	18.841
SRR5252882	dormant buds	no	dormant buds(3 months)	20.5133
SRR5252883	dormant buds	no	dormant buds(3 months)	20.2056
SRR5252880	dormant buds	no	dormant buds(4 months)	24.0022
SRR5252881	dormant buds	no	dormant buds(4 months)	13.0409
SRR5252878	bud break	no	bud break	21.9984
SRR5252879	bud break	no	bud break	34.2516
SRR3744766	flower	no	mature	13.3763
SRR3744767	flower	no	mature	11.922
SRR3744768	flower	no	mature	13.1754
SRR6308190	stigmas	no	open flowers	24.916
SRR6308181	styles	no	open flowers	42.8672
SRR6308188	filaments	no	open flowers	76.5974
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	47.9892
SRR6308192	pollen	no	open flowers	90.1345
SRR6308191	petals	no	open flowers	51.8197
SRR6308194	sepals	no	open flowers	26.1421
SRR6308193	receptacles	no	open flowers	60.6951
SRR6308189	ovaries	no	open flowers	39.13
SRR3384922	fruit	no	1 week after full bloom	59.0306
SRR3384921	fruit	no	2 week after full bloom	55.2443
SRR3384920	fruit	no	3 week after full bloom	67.1723
SRR3384919	fruit	no	4 week after full bloom	84.756
SRR3384923	fruit	no	5 week after full bloom	114.348
SRR3384918	fruit	no	6 week after full bloom	94.7534
SRR3384917	fruit	no	8 week after full bloom	59.8379
SRR3384916	fruit	no	10 week after full bloom	66.3223
SRR3384915	fruit	no	12 week after full bloom	59.4409
SRR3384914	fruit	no	14 week after full bloom	59.3099
SRR3384913	fruit	no	16 week after full bloom	67.3423
SRR3384912	fruit	no	18 week after full bloom	72.2179
SRR3384911	fruit	no	19 week after full bloom	80.9355
SRR3384910	fruit	no	20 week after full bloom	80.2663
SRR768128	whole fruit	no	25 days post anthesis	43.9706
SRR768129	whole fruit	no	35 days post anthesis	99.8248
SRR768130	whole fruit	no	60 days post anthesis	111.997
SRR768131	whole fruit	no	87 days post anthesis	122.347
SRR7343308	immature fruit flesh	no	immature	46.3788
SRR7343309	immature fruit flesh	no	immature	47.3896
SRR6320494	ripe fruit flesh	no	mature	35.0501
SRR5405143	ripe fruit peel	no	mature	45.513
SRR6320572	ripe fruit peel	no	mature	37.8662
SRR7403504	fruit	uninfected	mature	36.8063
SRR7403506	fruit	uninfected	mature	36.2163
SRR7403507	fruit	uninfected	mature	35.8174
SRR7403500	fruit	infected with penicillium expansum	mature	157.46
SRR7403501	fruit	infected with penicillium expansum	mature	150.538
SRR7403508	fruit	infected with penicillium expansum	mature	154.502
SRR7403502	fruit	infected with penicillium expansum	mature	128.663
SRR7403503	fruit	infected with penicillium expansum	mature	127.836
SRR7403505	fruit	infected with penicillium expansum	mature	133.065
SRR1613973	Central seeds	no	20DAPF	47.2954
SRR1613974	Central seeds	no	20DAPF	48.9434
SRR1613975	Central seeds	no	20DAPF	48.2254
SRR1613976	Lateral seeds	no	20DAPF	45.9036
SRR1613977	Lateral seeds	no	20DAPF	47.8616
SRR1613978	Lateral seeds	no	20DAPF	46.0536
SRR3744786	stem	no	mature	3.95063
SRR3744787	stem	no	mature	3.43564
SRR3744772	stem	no	mature	3.27674
SRX765691	seedling shoot apex	no	4-6 week old seedling	39.3716
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	44.5201
SRR1089478	leaf	Virus-free	plantlets	4.36754
SRR1089477	leaf	ASGV-infected	plantlets	4.58772
SRR767660	leaf	uninfected	fully developed	1.6615
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	11.3513
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.80852
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	7.15422
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.48474
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.93463
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.35377
SRR6308182	young leaf	no	immature leaves	51.1504
SRR3744769	leaf	no	mature	1.24278
SRR3744770	leaf	no	mature	2.0773
SRR3744771	leaf	no	mature	1.81537
SRR5405145	leaf	no	mature	3.23836
SRR6320561	leaf	no	mature	5.96553