Gene detail

Detail information of MD10G1229300 Annotation

Gene ID	Annotation
MD10G1229300	Serine protease inhibitor (SERPIN) family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1229300	mRNA	Chr10	32625894	32627390	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
--	--	--	--

Gene Ontology

GO term	Description	Category
GO:0005615	extracellular space	cellular component
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006414	translational elongation	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00079.16	Serpin	123	495	2.30E-89

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.08413
SRR5252888	dormant buds	no	dormant buds(0 month)	1.7254
SRR5252889	dormant buds	no	dormant buds(0 month)	1.33252
SRR5252886	dormant buds	no	dormant buds(1 months)	1.46119
SRR5252887	dormant buds	no	dormant buds(1 months)	2.01884
SRR5252884	dormant buds	no	dormant buds(2 months)	0.992028
SRR5252882	dormant buds	no	dormant buds(3 months)	1.61679
SRR5252883	dormant buds	no	dormant buds(3 months)	3.04922
SRR5252880	dormant buds	no	dormant buds(4 months)	5.3372
SRR5252881	dormant buds	no	dormant buds(4 months)	3.23757
SRR5252878	bud break	no	bud break	1.35991
SRR5252879	bud break	no	bud break	2.67326
SRR3744766	flower	no	mature	1.35612
SRR3744767	flower	no	mature	0.89048
SRR3744768	flower	no	mature	1.17189
SRR6308190	stigmas	no	open flowers	0.591351
SRR6308181	styles	no	open flowers	1.18623
SRR6308188	filaments	no	open flowers	2.29196
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.656392
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.543877
SRR6308194	sepals	no	open flowers	0.527129
SRR6308193	receptacles	no	open flowers	1.42927
SRR6308189	ovaries	no	open flowers	1.22969
SRR3384922	fruit	no	1 week after full bloom	0.582173
SRR3384921	fruit	no	2 week after full bloom	0.945249
SRR3384920	fruit	no	3 week after full bloom	0.332923
SRR3384919	fruit	no	4 week after full bloom	0.102524
SRR3384923	fruit	no	5 week after full bloom	0.341248
SRR3384918	fruit	no	6 week after full bloom	0.434148
SRR3384917	fruit	no	8 week after full bloom	0.391749
SRR3384916	fruit	no	10 week after full bloom	0.763371
SRR3384915	fruit	no	12 week after full bloom	0.963427
SRR3384914	fruit	no	14 week after full bloom	1.05118
SRR3384913	fruit	no	16 week after full bloom	1.16934
SRR3384912	fruit	no	18 week after full bloom	1.09736
SRR3384911	fruit	no	19 week after full bloom	1.98117
SRR3384910	fruit	no	20 week after full bloom	1.30883
SRR768128	whole fruit	no	25 days post anthesis	0.490276
SRR768129	whole fruit	no	35 days post anthesis	0.769136
SRR768130	whole fruit	no	60 days post anthesis	0.773718
SRR768131	whole fruit	no	87 days post anthesis	1.0677
SRR7343308	immature fruit flesh	no	immature	1.37598
SRR7343309	immature fruit flesh	no	immature	1.02993
SRR6320494	ripe fruit flesh	no	mature	3.28698
SRR5405143	ripe fruit peel	no	mature	4.03501
SRR6320572	ripe fruit peel	no	mature	4.55474
SRR7403504	fruit	uninfected	mature	4.20083
SRR7403506	fruit	uninfected	mature	4.53997
SRR7403507	fruit	uninfected	mature	4.33667
SRR7403500	fruit	infected with penicillium expansum	mature	5.09456
SRR7403501	fruit	infected with penicillium expansum	mature	3.84207
SRR7403508	fruit	infected with penicillium expansum	mature	3.75253
SRR7403502	fruit	infected with penicillium expansum	mature	5.87158
SRR7403503	fruit	infected with penicillium expansum	mature	4.32062
SRR7403505	fruit	infected with penicillium expansum	mature	6.17233
SRR1613973	Central seeds	no	20DAPF	14.3223
SRR1613974	Central seeds	no	20DAPF	13.2747
SRR1613975	Central seeds	no	20DAPF	11.6749
SRR1613976	Lateral seeds	no	20DAPF	10.424
SRR1613977	Lateral seeds	no	20DAPF	11.4435
SRR1613978	Lateral seeds	no	20DAPF	11.7701
SRR3744786	stem	no	mature	2.46858
SRR3744787	stem	no	mature	2.68151
SRR3744772	stem	no	mature	2.80687
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.677748
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.875199
SRR1089478	leaf	Virus-free	plantlets	1.67727
SRR1089477	leaf	ASGV-infected	plantlets	1.04083
SRR767660	leaf	uninfected	fully developed	0.340225
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.245809
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.294945
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.28921
SRR6308182	young leaf	no	immature leaves	0.917865
SRR3744769	leaf	no	mature	0.932014
SRR3744770	leaf	no	mature	0.490914
SRR3744771	leaf	no	mature	0.995688
SRR5405145	leaf	no	mature	0.597495
SRR6320561	leaf	no	mature	0.58573