Gene detail

Detail information of MD10G1253200 Annotation

Gene ID	Annotation
MD10G1253200	root FNR 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1253200	mRNA	Chr10	34577884	34580680	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G30510.1	1	ATRFNR2;RFNR2\|root FNR 2
Arabidopsis thaliana	AT1G30510.2	0.973	ATRFNR2;RFNR2\|root FNR 2
Pyrus communis	PCP005468.1	1	-
Pyrus x bretschneideri	Pbr037487.1	1	-
Rosa multiflora	Rmu_sc0001878.1_g000003.1	1	-
Rosa multiflora	Rmu_sc0021845.1_g000003.1	1	-
Rosa multiflora	Rmu_sc0000299.1_g000024.1	1	-
Rubus occidentalis	Ro03_G16157	1	-
Vitis vinifera	GSVIVT01021650001	1	root FNR 2
Populus trichocarpa	Potri.001G371900.1	1	root FNR 1
Nicotiana benthamiana	Niben101Scf03282g07004.1	1	Ferredoxin--NADP reductase
Nicotiana benthamiana	Niben101Scf09005g00008.1	0.854	"Ferredoxin--NADP reductase, chloroplastic"
Oryza sativa	LOC_Os07g05400.1	1	"ferredoxin--NADP reductase, chloroplast precursor, putative, expressed"
Oryza sativa	LOC_Os03g57120.1	1	"ferredoxin--NADP reductase, chloroplast precursor, putative, expressed"
Zea mays	GRMZM2G058760_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0004324	ferredoxin-NADP+ reductase activity	molecular_function
GO:0050660	flavin adenine dinucleotide binding	molecular_function
GO:0050661	NADP binding	molecular_function
GO:0042651	thylakoid membrane	cellular component
GO:0055114	oxidation-reduction process	biological_process

KEGG

KO	Description	Enzyme
K02641	ferredoxin--NADP+ reductase	EC:1.18.1.2

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00175.17	NAD_binding_1	233	347	6.20E-27

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	46.8344
SRR5252888	dormant buds	no	dormant buds(0 month)	9.01282
SRR5252889	dormant buds	no	dormant buds(0 month)	9.28077
SRR5252886	dormant buds	no	dormant buds(1 months)	9.59865
SRR5252887	dormant buds	no	dormant buds(1 months)	12.4753
SRR5252884	dormant buds	no	dormant buds(2 months)	6.77188
SRR5252882	dormant buds	no	dormant buds(3 months)	6.89026
SRR5252883	dormant buds	no	dormant buds(3 months)	7.56174
SRR5252880	dormant buds	no	dormant buds(4 months)	12.9672
SRR5252881	dormant buds	no	dormant buds(4 months)	12.5939
SRR5252878	bud break	no	bud break	14.8726
SRR5252879	bud break	no	bud break	12.6403
SRR3744766	flower	no	mature	22.904
SRR3744767	flower	no	mature	21.901
SRR3744768	flower	no	mature	22.346
SRR6308190	stigmas	no	open flowers	21.9306
SRR6308181	styles	no	open flowers	24.19
SRR6308188	filaments	no	open flowers	20.6321
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	28.708
SRR6308192	pollen	no	open flowers	96.1347
SRR6308191	petals	no	open flowers	18.9373
SRR6308194	sepals	no	open flowers	25.0568
SRR6308193	receptacles	no	open flowers	17.2433
SRR6308189	ovaries	no	open flowers	19.3386
SRR3384922	fruit	no	1 week after full bloom	17.969
SRR3384921	fruit	no	2 week after full bloom	21.5948
SRR3384920	fruit	no	3 week after full bloom	23.9768
SRR3384919	fruit	no	4 week after full bloom	24.6258
SRR3384923	fruit	no	5 week after full bloom	28.4345
SRR3384918	fruit	no	6 week after full bloom	20.9162
SRR3384917	fruit	no	8 week after full bloom	20.4625
SRR3384916	fruit	no	10 week after full bloom	30.9323
SRR3384915	fruit	no	12 week after full bloom	26.4483
SRR3384914	fruit	no	14 week after full bloom	39.1468
SRR3384913	fruit	no	16 week after full bloom	26.4565
SRR3384912	fruit	no	18 week after full bloom	39.4899
SRR3384911	fruit	no	19 week after full bloom	31.5547
SRR3384910	fruit	no	20 week after full bloom	43.735
SRR768128	whole fruit	no	25 days post anthesis	23.6371
SRR768129	whole fruit	no	35 days post anthesis	27.6022
SRR768130	whole fruit	no	60 days post anthesis	146.903
SRR768131	whole fruit	no	87 days post anthesis	21.9921
SRR7343308	immature fruit flesh	no	immature	22.8596
SRR7343309	immature fruit flesh	no	immature	28.5095
SRR6320494	ripe fruit flesh	no	mature	64.6481
SRR5405143	ripe fruit peel	no	mature	65.5775
SRR6320572	ripe fruit peel	no	mature	30.3375
SRR7403504	fruit	uninfected	mature	65.2606
SRR7403506	fruit	uninfected	mature	66.8296
SRR7403507	fruit	uninfected	mature	68.2425
SRR7403500	fruit	infected with penicillium expansum	mature	36.0489
SRR7403501	fruit	infected with penicillium expansum	mature	31.5085
SRR7403508	fruit	infected with penicillium expansum	mature	34.1775
SRR7403502	fruit	infected with penicillium expansum	mature	37.3112
SRR7403503	fruit	infected with penicillium expansum	mature	41.6736
SRR7403505	fruit	infected with penicillium expansum	mature	38.1187
SRR1613973	Central seeds	no	20DAPF	19.488
SRR1613974	Central seeds	no	20DAPF	17.984
SRR1613975	Central seeds	no	20DAPF	17.8178
SRR1613976	Lateral seeds	no	20DAPF	18.4315
SRR1613977	Lateral seeds	no	20DAPF	18.1753
SRR1613978	Lateral seeds	no	20DAPF	19.5134
SRR3744786	stem	no	mature	17.2241
SRR3744787	stem	no	mature	16.9962
SRR3744772	stem	no	mature	17.2854
SRX765691	seedling shoot apex	no	4-6 week old seedling	15.275
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	23.6549
SRR1089478	leaf	Virus-free	plantlets	34.3066
SRR1089477	leaf	ASGV-infected	plantlets	29.4305
SRR767660	leaf	uninfected	fully developed	19.9647
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.25486
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.42268
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	8.13182
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	72.9451
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	44.257
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	24.6519
SRR6308182	young leaf	no	immature leaves	22.8469
SRR3744769	leaf	no	mature	14.1969
SRR3744770	leaf	no	mature	15.2012
SRR3744771	leaf	no	mature	17.2914
SRR5405145	leaf	no	mature	12.6186
SRR6320561	leaf	no	mature	9.99796