Gene detail

Detail information of MD10G1274700 Annotation

Gene ID	Annotation
MD10G1274700	AAA-type ATPase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1274700	mRNA	Chr10	36612410	36619113	-

Sequences

CDS:

MD10G1274700

GAGAGTTTGGTCTGCATGCTCAAACAAACGGACTCACCGCTTTTTTTGCTTTTTTTGCAAGTGTTCTCTGTTTGCAGAGGTGTGTCTCTCTGTCTGTCTGTGACAGATCGATCTCTCTCTCTCTCTCCACCCTCTCAGATTCTCTCTCTCAACTCTCTCTCTCAGTCTCTCATTTTTCTCACTACCCTCTTGCTGCTGGCTCTATCTCTCTCTAACCATCTCTCTCACTCTAAAGGTGGTTGCCTTGAAAGGGAAAGGGCCTTGTGAAGTGCATGTGAAGCTCGGTGGGAGATCTGGGTGGGGGACTTAATGATGCAAACGGTTCACTGCCTTTTCTGATTTCAGGTGATTGGAGTGCTTCCTTCTTTCCCTTTCAGCTTTTCCCCTTCCTTTAATTATTTTTTTCCTCCTTTTGGATGTTACTTCATGTTCTTTCTATCTCAGCCTTATGTTAATTCTCTCCCATTTTCCCCAAAAAGTTGGCCTCTTTAGGGTTTTAGGGCAACAGCCATGGTGCTTTGATTGCTTCTGAGCTTTCTCCAAATGGGTTTATTTTAGTTGGAAGTTTTGGGTTTTCTTTAATTGATGCATTGAATTTCAGCTGTGTTTTTTGGTGGCTGTTTCTGCTTGTTCTGGGGTTCCATTTGGGTGAGATGCTTTAAAGGTTATGTCTTTGCTGCTGTTTTGATGAGCTGAGGGGATTACTGAGTTGTTCGTCCGGGTGTTGCTGTTGGGTTCATTGCCTTTCAGTGAGAAATTGTGTGTTTTGAGGGGATGGCGGCGTGATCATTCAAAATGGTGTTGTTTAATTTGAAATTGAATGTTATTTTCGTGTTGGAGGATCTTTGATTGATTGAATTTTGGCGGCTTTTCCGAACAGTTAGTTGGAGGATAGCATTGGTGTACATTGAGGGATTTTTGTTGCTTTTATGCTGCCATTGTTCCGGAGATTCGGGTGGTATTAAGTAACCATGCGAAACGTGTTTGTTTGTTTCATTAATTCAAAAGAGATTCTGCCATCGGACACATTGACGGTCTGATCATGACCAGGGCTGTTCGAGATAGGATACTCAAGGATGCGAACGGTGATATTAGTGATCATCTGCGCAACCACATTCATTTGACAAATTGCATTCACTTGAAGAACCATATGCACAAGCGAAGCCCCATATTGGCTGACAGGTCACTTATGAGGGACCTTGTCGTTCTTCAGAGGTCGCGATCCCTCAGGGACCCTTCCGCCAGTCCTCCCTCATGGCATTCGCCTTCCATTCTTGACATGCTTTCCAGAAAAGGTGAGAATGATGCCTTGGTGCGTGAGGGGAGGAGGTCAGTAGGAAGTGAGTATCGAAGGGAAGCCAGGAGGTTATCAGCAGGTTCTCCAACTTTGGCAAGTTTAGTGACACCAAAAGTTGCTCCACGCGAGGCTAATGATGGCAATGGCGGTGTGGCCGGAATCAGTGAACATGGCAGCAAGAGTGGAGTTAAGGATGGTAGGAAAATTAGGAGAGAAGAATCTAGTCAGAAGAGTAATAGGAGTAATATTTTGGGTGGCAATGAGGAACCTCCGCTAGACCAGAATGATAACGATTTGACTCATGACGCTCTTTCTGGAAATTCAGAATCCAAAAGTAGAAAAAGTAAACAAAAGGGAAAGCTCACTCAAGGTGCTCGAATGAAGACTCTCTCTGAGCAGTTGAATGATGTTAGGATGGATAGTGACGATGTAACGTCCTCTAATATCCACTTACCTGGAAGACGGTCCCAACAGGAAAGAATCGCTGAGGAACCGGAGGTCTGCGTTCAGGGATATTGCAGTGGACTAAGTAGGGTAAAAAGGCGGAGATTCCGAGGTGCAAGAAGAAGTCGTGCTTCTGTAGCTTCCAGAGACTTTGGAGCTCAGAATGGTTTATCTGTGGCTTCCAATTCATTAGCTCAAGGGTCAGCTCACCGAAAGTATCACATGGAACAGGGAGCAGATGAGTATGGTGAGCAAAATGTCACAAGGGCTCCTAGAAATGGGTGTGGGATTCCATGGAATTGGTCGAGAATCCATCATAGAGGTAAAACATTCCTCGACAATGCTGGAAGGAGCTTTTCTTGTGGTTTATCTGATTCAAGATTTAAGAAGGGTGGTCTGGCTGCCCATGGTCGAGATATTTCTGACATGCCCGTGACATCTGATAACTCGAGCATTTCTACTAAATCTGAATCTGAGGCACTGCCTTTACTAGTTGAAGCATCTGGATCACAGGCAAGCTCTGACAACGCTGGTTGGGTACATGACTATTCTGGTGAACTTGGTATTTATGCTGATAATTTATTGAAGCATGATGTCGGTTCTGACTATGCTTCTGAAGCTAGATCTGGTGATCACCGCAAATTGAGGGGGCACCGCCGGCGTAGGCACCAAAATCTGACACAAAGGTACATGCCAAGAACCTTTAGAGATCTTGTGGGACAGAATTTGGTGGCACAAGCTCTTTCAAATGCTGTCATAAAAAAGAAAGTTGGGTTGCTATACGTGTTCTATGGTCCTCATGGCACAGGGAAAACCTCATGTGCTCGCATATTTGCTAGAGCTCTAAATTGCCATTCTGTGGATGATCCCAAGCCTTGTGGCTTTTGCAATTCTTGCATCGCACATGATATGGGCAAGAGTAGAAATATAAAGGAAGTTGGGCCTGTTAGTAACTTCAACTTCGAGAGCATTGTGGACCTACTTGACAATATGATTGTTTCCCAGCTGCCATCACAGTACAGAGTGTTCATCTTTGATGATTGTGATACGTTGTCTGCTGAGTGTTGGAGTGCCATATTGAAGGCCATTGATCGAGCACCCAGACATGTGGTTTTTGTCCTTGTCTGTTCAAGTCTTGATGTTTTGTCGGATGGTTCATTGAGGGATGCTGAGATGACTCTAGAGCAACTGAGTTTGCTTGGCCAGCGAATCTCCGTTCCTCTTGTTCAGGAACTGGTCGGGCTTATCTCTGATGAGAAATTGATAGATCTTCTAGATTTAGCATTATCGGCAGACACAGTTAATACTGTGAAGAATTTGAGAATGATAATGGAAACTGGTGTTGATCCAGTAGGCTTGATGTCACAACTAGCAACGGTAATTACAGATATACTTGCTGGCAGCTATGATTATAGAAAAGAAAGGCGTAGAAGGAAGTTCTTTCGTAACCAACCATTATCGAAGGAAGACATGGAGAAATTGCGTCAAGCTTTGAAAACTTTATCTGAGGCTGAGAAACAATTGAGGATGTCAAATGACAAGTTAACATGGCTAACAGCTGCACTACTCCAACTTGCTCCTGATCAACAGTATATGCTGCCTAGTTCTTCTGGAAACGCAAGTTTCCATCACAGTCCCTTGGCCTTAAATAATGTGGGCGGAAGGAGTGCTGTCAGGAAAGATAGTGAACAAGGTGGGATGCCAAATTATGAGAAAGGTCTGCCAATTAACGTTAGAAATTCTGTAAGTTCTGGGAAAGGTATGATTTCAGATAGAAAACGTCATGCTGCTTCGGGTATGGCTTCTCAACAGACGGCCACAGGCTCTGCTGAAATGGTCAGGGTAAAGGGGAAGCAAATCCATGGCAAAAGCCATAAAGGAATTGAAGAAATTTGGTTGGAGGTGCTTGAGAAAATTCCGTATAATCGAATTAAAGAATTTTTGTACCAAGAAGGGAAGCTGACCTCAGTCAGTTTTGGTGCAGCTCCCACCGCGCAGTTGATGTTCTCTTCGCAAATGACTAAATCTACCGCTGAGAAGTTCAGAACGCAGATTTTGCAGGCATTTGAGATTGTTCTACGGTCTCCCCTGACAATTGAAATTAGATGTGAATCAAAAAGAAATAGTAAAGAATGGGCTCAGATGCCTATTATTATACCTGCTTCAAAGGATGGTTCATCCCATATTAGAGATGAAAATGCAGTCACCACCGATGCCCAGCTCGTGGCCCATGATACCTGTGAAATGGGGACGAGTGAAATTGTTGAAGTAGCTGCTTCTCCTAGGGAAACCAAGGGTGGTGGTCAAATGCATAACCAAAAGAAATCAACCATGGCGATAATTCCAGAAAAACAACAAAGTCAGAATCAAAGCATTGTCAGGAGCAAGGTGTCCCTTGCACATGTAATTCAGCAGTCAGAATCGCAACGCAGTGGATGGTCACAACGCAAAGCTGTTTCTATTGCTGAAAAGCTCGAACAAGATAATTTGAGACTGGAATCTCGTTCGAGAAGTTTGCTTTGCTGGAAAGCATCTAGAGGAACTCGTCGAAGGCTTTCGCGGTTGAAGATACGGGCACGAAGACCGCATTCGTTACTGAAGCTTGTGTCCTGCGGAAAGTGTCTGTCTTCAAGGTCTCCAAGGGTAGCATAAGAGAGTTAGTTTTGGCTATAGCTTTAAAGGGTCTATACAACCTCATCTGCATTTCTTGTATTTAGCCATTTTCATTCAGATTACTAGCTCAATTTATTTCCTTTACATTGAATAAAAGTGATATTTCATGAAAAGATGTAGGGAAACTTTTTTTTTTTTTTTTT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G18820.1	1	AAA-type ATPase family protein
Pyrus communis	PCP026172.1	1	-
Pyrus x bretschneideri	Pbr016093.1	1	-
Vitis vinifera	GSVIVT01021264001	1	AAA-type ATPase family protein
Solanum lycopersicum	Solyc02g072090.1.1	1	AAA-type ATPase family protein
Nicotiana benthamiana	Niben101Scf00073g00008.1	1	Replication factor C subunit 4
Nicotiana benthamiana	Niben101Scf05948g05001.1	0.847	Replication factor C subunit 4
Oryza sativa	LOC_Os05g45340.1	1	"ATP binding protein, putative, expressed"
Oryza sativa	LOC_Os01g53070.1	1	"ATP binding protein, putative, expressed"
Zea mays	GRMZM2G124876_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0000166	nucleotide binding	molecular_function
GO:0003887	DNA-directed DNA polymerase activity	molecular_function
GO:0006260	DNA replication	biological_process
GO:0017111	nucleoside-triphosphatase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13177.2	DNA_pol3_delta2	473	614	2.80E-19

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.43064
SRR5252888	dormant buds	no	dormant buds(0 month)	3.21078
SRR5252889	dormant buds	no	dormant buds(0 month)	3.79823
SRR5252886	dormant buds	no	dormant buds(1 months)	4.31603
SRR5252887	dormant buds	no	dormant buds(1 months)	3.83022
SRR5252884	dormant buds	no	dormant buds(2 months)	4.50524
SRR5252882	dormant buds	no	dormant buds(3 months)	3.74706
SRR5252883	dormant buds	no	dormant buds(3 months)	1.56117
SRR5252880	dormant buds	no	dormant buds(4 months)	3.00634
SRR5252881	dormant buds	no	dormant buds(4 months)	2.7265
SRR5252878	bud break	no	bud break	3.43261
SRR5252879	bud break	no	bud break	4.9807
SRR3744766	flower	no	mature	0.682202
SRR3744767	flower	no	mature	0.654779
SRR3744768	flower	no	mature	0.528072
SRR6308190	stigmas	no	open flowers	0.354219
SRR6308181	styles	no	open flowers	0.406987
SRR6308188	filaments	no	open flowers	0.989812
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.45794
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.978449
SRR6308194	sepals	no	open flowers	0.442427
SRR6308193	receptacles	no	open flowers	0.630183
SRR6308189	ovaries	no	open flowers	0.287018
SRR3384922	fruit	no	1 week after full bloom	0.722123
SRR3384921	fruit	no	2 week after full bloom	0.837486
SRR3384920	fruit	no	3 week after full bloom	0.163871
SRR3384919	fruit	no	4 week after full bloom	0.302786
SRR3384923	fruit	no	5 week after full bloom	0.0575893
SRR3384918	fruit	no	6 week after full bloom	0.0480816
SRR3384917	fruit	no	8 week after full bloom	0.0231392
SRR3384916	fruit	no	10 week after full bloom	0.0601193
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0.0172471
SRR3384913	fruit	no	16 week after full bloom	0.0812568
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.109707
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.560389
SRR768129	whole fruit	no	35 days post anthesis	0.638182
SRR768130	whole fruit	no	60 days post anthesis	0.5732
SRR768131	whole fruit	no	87 days post anthesis	0.287635
SRR7343308	immature fruit flesh	no	immature	0.507295
SRR7343309	immature fruit flesh	no	immature	0.30348
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.28206
SRR6320572	ripe fruit peel	no	mature	0.0854823
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0.040423
SRR7403507	fruit	uninfected	mature	0.0119989
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0.0228415
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	8.95717
SRR1613974	Central seeds	no	20DAPF	9.3777
SRR1613975	Central seeds	no	20DAPF	8.10942
SRR1613976	Lateral seeds	no	20DAPF	6.83012
SRR1613977	Lateral seeds	no	20DAPF	7.69065
SRR1613978	Lateral seeds	no	20DAPF	9.3471
SRR3744786	stem	no	mature	0.561427
SRR3744787	stem	no	mature	0.539597
SRR3744772	stem	no	mature	0.545889
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.02569
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.80027
SRR1089478	leaf	Virus-free	plantlets	0.631116
SRR1089477	leaf	ASGV-infected	plantlets	0.772974
SRR767660	leaf	uninfected	fully developed	0.404615
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.67777
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.74206
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.435468
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.352231
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.15386
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.429811
SRR6308182	young leaf	no	immature leaves	2.05438
SRR3744769	leaf	no	mature	0.567186
SRR3744770	leaf	no	mature	0.819729
SRR3744771	leaf	no	mature	0.739914
SRR5405145	leaf	no	mature	1.00229
SRR6320561	leaf	no	mature	0.917931