Gene detail

Detail information of MD10G1280100 Annotation

Gene ID	Annotation
MD10G1280100	pyrimidine d

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1280100	mRNA	Chr10	37111634	37117038	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G23300.1	1	PYRD\|pyrimidine d
Pyrus communis	PCP013916.1	1	-
Pyrus x bretschneideri	Pbr016135.1	1	-
Rosa multiflora	Rmu_sc0000109.1_g000020.1	1	-
Rubus occidentalis	Ro03_G05244	1	-
Fragaria vesca	mrna29660.1	1	pyrimidine d
Vitis vinifera	GSVIVT01026142001	1	pyrimidine d
Populus trichocarpa	Potri.005G089700.1	1	pyrimidine d
Nicotiana benthamiana	Niben101Scf04077g06008.1	1	Dihydroorotate dehydrogenase (quinone)
Oryza sativa	LOC_Os04g57950.1	1	"dihydroorotate dihydrogenase protein, putative, expressed"
Zea mays	GRMZM2G043776_P01	1	Dihydroorotate dehydrogenase

Gene Ontology

GO term	Description	Category
GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	biological_process
GO:0016020	membrane	cellular component
GO:0006222	UMP biosynthetic process	biological_process
GO:0055114	oxidation-reduction process	biological_process
GO:0004158	dihydroorotate oxidase activity	molecular_function

KEGG

KO	Description	Enzyme
K00254	dihydroorotate dehydrogenase	EC:1.3.5.2

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01180.17	DHO_dh	174	490	9.40E-100

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.65623
SRR5252888	dormant buds	no	dormant buds(0 month)	2.76183
SRR5252889	dormant buds	no	dormant buds(0 month)	4.10594
SRR5252886	dormant buds	no	dormant buds(1 months)	2.80669
SRR5252887	dormant buds	no	dormant buds(1 months)	3.41797
SRR5252884	dormant buds	no	dormant buds(2 months)	4.56529
SRR5252882	dormant buds	no	dormant buds(3 months)	4.77781
SRR5252883	dormant buds	no	dormant buds(3 months)	4.39276
SRR5252880	dormant buds	no	dormant buds(4 months)	4.86763
SRR5252881	dormant buds	no	dormant buds(4 months)	4.74129
SRR5252878	bud break	no	bud break	3.85886
SRR5252879	bud break	no	bud break	4.11447
SRR3744766	flower	no	mature	1.72446
SRR3744767	flower	no	mature	2.03533
SRR3744768	flower	no	mature	2.06163
SRR6308190	stigmas	no	open flowers	2.61325
SRR6308181	styles	no	open flowers	2.7931
SRR6308188	filaments	no	open flowers	0.409031
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.11088
SRR6308192	pollen	no	open flowers	1.20002
SRR6308191	petals	no	open flowers	3.14734
SRR6308194	sepals	no	open flowers	3.05019
SRR6308193	receptacles	no	open flowers	3.04076
SRR6308189	ovaries	no	open flowers	2.69113
SRR3384922	fruit	no	1 week after full bloom	2.8421
SRR3384921	fruit	no	2 week after full bloom	2.82423
SRR3384920	fruit	no	3 week after full bloom	2.66441
SRR3384919	fruit	no	4 week after full bloom	2.46152
SRR3384923	fruit	no	5 week after full bloom	2.49695
SRR3384918	fruit	no	6 week after full bloom	1.73726
SRR3384917	fruit	no	8 week after full bloom	2.57086
SRR3384916	fruit	no	10 week after full bloom	2.89174
SRR3384915	fruit	no	12 week after full bloom	2.89139
SRR3384914	fruit	no	14 week after full bloom	2.71076
SRR3384913	fruit	no	16 week after full bloom	2.64234
SRR3384912	fruit	no	18 week after full bloom	2.9963
SRR3384911	fruit	no	19 week after full bloom	2.32877
SRR3384910	fruit	no	20 week after full bloom	1.86216
SRR768128	whole fruit	no	25 days post anthesis	3.42252
SRR768129	whole fruit	no	35 days post anthesis	1.04743
SRR768130	whole fruit	no	60 days post anthesis	1.13631
SRR768131	whole fruit	no	87 days post anthesis	1.32185
SRR7343308	immature fruit flesh	no	immature	3.57759
SRR7343309	immature fruit flesh	no	immature	3.29492
SRR6320494	ripe fruit flesh	no	mature	2.37224
SRR5405143	ripe fruit peel	no	mature	1.99571
SRR6320572	ripe fruit peel	no	mature	2.06005
SRR7403504	fruit	uninfected	mature	2.04445
SRR7403506	fruit	uninfected	mature	1.99563
SRR7403507	fruit	uninfected	mature	1.52555
SRR7403500	fruit	infected with penicillium expansum	mature	1.00329
SRR7403501	fruit	infected with penicillium expansum	mature	2.48142
SRR7403508	fruit	infected with penicillium expansum	mature	1.43107
SRR7403502	fruit	infected with penicillium expansum	mature	1.43835
SRR7403503	fruit	infected with penicillium expansum	mature	1.11221
SRR7403505	fruit	infected with penicillium expansum	mature	1.33299
SRR1613973	Central seeds	no	20DAPF	5.4691
SRR1613974	Central seeds	no	20DAPF	5.15328
SRR1613975	Central seeds	no	20DAPF	4.58204
SRR1613976	Lateral seeds	no	20DAPF	4.62856
SRR1613977	Lateral seeds	no	20DAPF	5.43423
SRR1613978	Lateral seeds	no	20DAPF	5.00859
SRR3744786	stem	no	mature	2.77884
SRR3744787	stem	no	mature	2.93915
SRR3744772	stem	no	mature	2.99473
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.47043
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.63931
SRR1089478	leaf	Virus-free	plantlets	1.25491
SRR1089477	leaf	ASGV-infected	plantlets	1.11248
SRR767660	leaf	uninfected	fully developed	1.0912
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.97493
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.17464
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.01256
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.275365
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.695631
SRR6308182	young leaf	no	immature leaves	5.56192
SRR3744769	leaf	no	mature	2.42592
SRR3744770	leaf	no	mature	2.29832
SRR3744771	leaf	no	mature	2.01377
SRR5405145	leaf	no	mature	1.4355
SRR6320561	leaf	no	mature	1.64564