Gene detail

Detail information of MD10G1298500 Annotation

Gene ID	Annotation
MD10G1298500	Polyphenol oxidase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0161	protein serine/threonine kinase activity polyphenol oxidase [EC:1.10.3.1]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1298500	mRNA	Chr10	38562790	38564622	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP025388.1	1	-
Rosa multiflora	Rmu_sc0005098.1_g000024.1	1	-
Rubus occidentalis	Ro03_G06471	1	-
Fragaria vesca	mrna18289.1	1	-
Vitis vinifera	GSVIVT01006794001	1	-
Solanum lycopersicum	Solyc02g078650.2.1	1	-
Oryza sativa	LOC_Os04g53300.1	1	"polyphenol oxidase, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0055114	oxidation-reduction process	biological_process
GO:0004097	catechol oxidase activity	molecular_function
GO:0046148	pigment biosynthetic process	biological_process

KEGG

KO	Description	Enzyme
K00422	polyphenol oxidase	EC:1.10.3.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00264.16	Tyrosinase	180	387	2.80E-34
PF12142.4	PPO1_DWL	395	446	8.20E-26
PF12143.4	PPO1_KFDV	479	608	1.70E-50

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	5.76267
SRR5252888	dormant buds	no	dormant buds(0 month)	39.6507
SRR5252889	dormant buds	no	dormant buds(0 month)	31.2029
SRR5252886	dormant buds	no	dormant buds(1 months)	42.4947
SRR5252887	dormant buds	no	dormant buds(1 months)	36.3031
SRR5252884	dormant buds	no	dormant buds(2 months)	11.6935
SRR5252882	dormant buds	no	dormant buds(3 months)	7.29299
SRR5252883	dormant buds	no	dormant buds(3 months)	10.3633
SRR5252880	dormant buds	no	dormant buds(4 months)	0.491788
SRR5252881	dormant buds	no	dormant buds(4 months)	0.218346
SRR5252878	bud break	no	bud break	0.587802
SRR5252879	bud break	no	bud break	28.3537
SRR3744766	flower	no	mature	16.1044
SRR3744767	flower	no	mature	16.5319
SRR3744768	flower	no	mature	15.0608
SRR6308190	stigmas	no	open flowers	7.68505
SRR6308181	styles	no	open flowers	0.472243
SRR6308188	filaments	no	open flowers	10.7336
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.46327
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	4.50198
SRR6308194	sepals	no	open flowers	31.9673
SRR6308193	receptacles	no	open flowers	12.2456
SRR6308189	ovaries	no	open flowers	0.271939
SRR3384922	fruit	no	1 week after full bloom	10.7947
SRR3384921	fruit	no	2 week after full bloom	11.1852
SRR3384920	fruit	no	3 week after full bloom	3.73727
SRR3384919	fruit	no	4 week after full bloom	2.19347
SRR3384923	fruit	no	5 week after full bloom	0.154516
SRR3384918	fruit	no	6 week after full bloom	0.301015
SRR3384917	fruit	no	8 week after full bloom	0.186252
SRR3384916	fruit	no	10 week after full bloom	0.120978
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0.0511497
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	2.16662
SRR768129	whole fruit	no	35 days post anthesis	0.549062
SRR768130	whole fruit	no	60 days post anthesis	0.920555
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	45.7758
SRR7343309	immature fruit flesh	no	immature	75.032
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0.680021
SRR7403504	fruit	uninfected	mature	0.0256239
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.141696
SRR7403502	fruit	infected with penicillium expansum	mature	0.109552
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.109987
SRR1613973	Central seeds	no	20DAPF	0.895673
SRR1613974	Central seeds	no	20DAPF	1.00349
SRR1613975	Central seeds	no	20DAPF	1.20816
SRR1613976	Lateral seeds	no	20DAPF	1.84541
SRR1613977	Lateral seeds	no	20DAPF	0.980477
SRR1613978	Lateral seeds	no	20DAPF	1.28488
SRR3744786	stem	no	mature	2.81435
SRR3744787	stem	no	mature	2.55369
SRR3744772	stem	no	mature	2.27561
SRX765691	seedling shoot apex	no	4-6 week old seedling	13.0068
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.71181
SRR1089478	leaf	Virus-free	plantlets	6.3017
SRR1089477	leaf	ASGV-infected	plantlets	4.13084
SRR767660	leaf	uninfected	fully developed	2.70124
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	19.5961
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.78104
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	6.97868
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.92365
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.08974
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.90322
SRR6308182	young leaf	no	immature leaves	8.48666
SRR3744769	leaf	no	mature	24.4701
SRR3744770	leaf	no	mature	20.9082
SRR3744771	leaf	no	mature	22.8902
SRR5405145	leaf	no	mature	303.536
SRR6320561	leaf	no	mature	459.304