Gene detail

Detail information of MD10G1314900 Annotation

Gene ID	Annotation
MD10G1314900	polyubiquitin 10

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0163	pyrimidine ribonucleotide biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1314900	mRNA	Chr10	39893809	39896373	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G05320.4	1	UBI10;UBQ10\|ubiquitin 10;polyubiquitin 10
Arabidopsis thaliana	AT4G05320.2	1	UBI10;UBQ10\|ubiquitin 10;polyubiquitin 10
Prunus persica	Prupe.4G025900.1.p	1	polyubiquitin 10
Pyrus x bretschneideri	Pbr032433.1	1	-
Pyrus x bretschneideri	Pbr031857.1	1	-
Rosa multiflora	Rmu_sc0007246.1_g000006.1	1	-
Rosa multiflora	Rmu_sc0007246.1_g000007.1	0.752	-
Rubus occidentalis	Ro04_G12759	1	-
Rubus occidentalis	Ro02_G13761	1	-
Fragaria vesca	mrna03175.1	1	polyubiquitin 10
Vitis vinifera	GSVIVT01023461001	1	polyubiquitin 10
Populus trichocarpa	Potri.011G134200.1	1	polyubiquitin 10
Oryza sativa	LOC_Os02g06640.1	1	"ubiquitin family protein, putative, expressed"
Oryza sativa	LOC_Os05g42424.1	1	"ubiquitin family protein, putative, expressed"
Oryza sativa	LOC_Os10g34960.1	1	"ubiquitin family protein, putative, expressed"
Oryza sativa	LOC_Os10g33620.1	1	"ubiquitin family protein, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00240.19	ubiquitin	14	82	3.60E-32
PF00240.19	ubiquitin	90	158	3.60E-32
PF00240.19	ubiquitin	166	234	3.60E-32
PF00240.19	ubiquitin	242	310	3.60E-32
PF00240.19	ubiquitin	318	386	3.60E-32
PF00240.19	ubiquitin	394	462	3.60E-32

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	231.314
SRR5252888	dormant buds	no	dormant buds(0 month)	151.89
SRR5252889	dormant buds	no	dormant buds(0 month)	204.853
SRR5252886	dormant buds	no	dormant buds(1 months)	236.432
SRR5252887	dormant buds	no	dormant buds(1 months)	288.549
SRR5252884	dormant buds	no	dormant buds(2 months)	198.391
SRR5252882	dormant buds	no	dormant buds(3 months)	158.426
SRR5252883	dormant buds	no	dormant buds(3 months)	308.786
SRR5252880	dormant buds	no	dormant buds(4 months)	98.819
SRR5252881	dormant buds	no	dormant buds(4 months)	106.238
SRR5252878	bud break	no	bud break	296.03
SRR5252879	bud break	no	bud break	249.785
SRR3744766	flower	no	mature	521.111
SRR3744767	flower	no	mature	505.145
SRR3744768	flower	no	mature	495.932
SRR6308190	stigmas	no	open flowers	755.81
SRR6308181	styles	no	open flowers	909.995
SRR6308188	filaments	no	open flowers	801.762
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	364.717
SRR6308192	pollen	no	open flowers	399.869
SRR6308191	petals	no	open flowers	599.207
SRR6308194	sepals	no	open flowers	689.723
SRR6308193	receptacles	no	open flowers	1209.54
SRR6308189	ovaries	no	open flowers	973.236
SRR3384922	fruit	no	1 week after full bloom	772.852
SRR3384921	fruit	no	2 week after full bloom	984.058
SRR3384920	fruit	no	3 week after full bloom	779.857
SRR3384919	fruit	no	4 week after full bloom	813.675
SRR3384923	fruit	no	5 week after full bloom	865.945
SRR3384918	fruit	no	6 week after full bloom	866.335
SRR3384917	fruit	no	8 week after full bloom	1059.54
SRR3384916	fruit	no	10 week after full bloom	879.871
SRR3384915	fruit	no	12 week after full bloom	969.651
SRR3384914	fruit	no	14 week after full bloom	732.936
SRR3384913	fruit	no	16 week after full bloom	839.651
SRR3384912	fruit	no	18 week after full bloom	733.203
SRR3384911	fruit	no	19 week after full bloom	915.261
SRR3384910	fruit	no	20 week after full bloom	776.091
SRR768128	whole fruit	no	25 days post anthesis	479.075
SRR768129	whole fruit	no	35 days post anthesis	1224.48
SRR768130	whole fruit	no	60 days post anthesis	987.373
SRR768131	whole fruit	no	87 days post anthesis	790.432
SRR7343308	immature fruit flesh	no	immature	948.422
SRR7343309	immature fruit flesh	no	immature	1051.56
SRR6320494	ripe fruit flesh	no	mature	391.715
SRR5405143	ripe fruit peel	no	mature	728.536
SRR6320572	ripe fruit peel	no	mature	957.477
SRR7403504	fruit	uninfected	mature	547.675
SRR7403506	fruit	uninfected	mature	566.002
SRR7403507	fruit	uninfected	mature	556.177
SRR7403500	fruit	infected with penicillium expansum	mature	1538.89
SRR7403501	fruit	infected with penicillium expansum	mature	1319.49
SRR7403508	fruit	infected with penicillium expansum	mature	1518.62
SRR7403502	fruit	infected with penicillium expansum	mature	1368.53
SRR7403503	fruit	infected with penicillium expansum	mature	1376.38
SRR7403505	fruit	infected with penicillium expansum	mature	1409.18
SRR1613973	Central seeds	no	20DAPF	331.719
SRR1613974	Central seeds	no	20DAPF	276.266
SRR1613975	Central seeds	no	20DAPF	412.421
SRR1613976	Lateral seeds	no	20DAPF	471.727
SRR1613977	Lateral seeds	no	20DAPF	419.701
SRR1613978	Lateral seeds	no	20DAPF	397.618
SRR3744786	stem	no	mature	545.498
SRR3744787	stem	no	mature	554.23
SRR3744772	stem	no	mature	540.187
SRX765691	seedling shoot apex	no	4-6 week old seedling	316.151
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	410.984
SRR1089478	leaf	Virus-free	plantlets	682.827
SRR1089477	leaf	ASGV-infected	plantlets	467.589
SRR767660	leaf	uninfected	fully developed	721.095
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1268.44
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	617.571
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1322.56
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	550.989
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1067.86
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	690.685
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	962.441
SRR6308182	young leaf	no	immature leaves	522.68
SRR3744769	leaf	no	mature	302.013
SRR3744770	leaf	no	mature	289.452
SRR3744771	leaf	no	mature	297.638
SRR5405145	leaf	no	mature	878.056
SRR6320561	leaf	no	mature	584.681