Gene detail

Detail information of MD10G1330700 Annotation

Gene ID	Annotation
MD10G1330700	Alkaline phytoceramidase (aPHC)

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0065	hydrolase activity dihydroceramidase [EC:3.5.1.-] palmitoyltransferase ZDHHC2/15/20 [EC:2.3.1.225] ceramide metabolic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1330700	mRNA	Chr10	40891636	40894269	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G22330.1	1	ATCES1\|Alkaline phytoceramidase (aPHC)
Prunus persica	Prupe.4G011800.1.p	1	Alkaline phytoceramidase (aPHC)
Pyrus communis	PCP013509.1	1	-
Pyrus x bretschneideri	Pbr031980.1	1	-
Rubus occidentalis	Ro03_G10217	1	-
Fragaria vesca	mrna19755.1	1	Alkaline phytoceramidase (aPHC)
Vitis vinifera	GSVIVT01020922001	1	Alkaline phytoceramidase (aPHC)
Solanum lycopersicum	Solyc05g053740.2.1	1	Alkaline phytoceramidase (aPHC)
Populus trichocarpa	Potri.004G001300.1	1	Alkaline phytoceramidase (aPHC)
Populus trichocarpa	Potri.T157700.1	0.643	Alkaline phytoceramidase (aPHC)
Populus trichocarpa	Potri.011G023400.1	0.607	Alkaline phytoceramidase (aPHC)
Nicotiana benthamiana	Niben101Scf01171g05003.1	1	Alkaline ceramidase 3
Nicotiana benthamiana	Niben101Scf08478g03007.1	1	Alkaline ceramidase 3
Nicotiana benthamiana	Niben101Scf02024g02006.1	0.991	Alkaline ceramidase 3
Oryza sativa	LOC_Os03g49180.1	1	"alkaline phytoceramidase, putative, expressed"
Zea mays	GRMZM2G180982_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0016021	integral component of membrane	cellular component
GO:0006672	ceramide metabolic process	biological_process

KEGG

KO	Description	Enzyme
K04711	dihydroceramidase	EC:3.5.1.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	30.8657
SRR5252888	dormant buds	no	dormant buds(0 month)	15.5842
SRR5252889	dormant buds	no	dormant buds(0 month)	12.8072
SRR5252886	dormant buds	no	dormant buds(1 months)	15.059
SRR5252887	dormant buds	no	dormant buds(1 months)	20.5005
SRR5252884	dormant buds	no	dormant buds(2 months)	12.0618
SRR5252882	dormant buds	no	dormant buds(3 months)	13.3935
SRR5252883	dormant buds	no	dormant buds(3 months)	12.9467
SRR5252880	dormant buds	no	dormant buds(4 months)	9.62985
SRR5252881	dormant buds	no	dormant buds(4 months)	10.609
SRR5252878	bud break	no	bud break	11.0232
SRR5252879	bud break	no	bud break	14.8429
SRR3744766	flower	no	mature	23.4899
SRR3744767	flower	no	mature	22.7861
SRR3744768	flower	no	mature	24.689
SRR6308190	stigmas	no	open flowers	13.0844
SRR6308181	styles	no	open flowers	15.74
SRR6308188	filaments	no	open flowers	16.1754
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	87.8566
SRR6308192	pollen	no	open flowers	566.43
SRR6308191	petals	no	open flowers	12.6796
SRR6308194	sepals	no	open flowers	11.1948
SRR6308193	receptacles	no	open flowers	15.8166
SRR6308189	ovaries	no	open flowers	14.2684
SRR3384922	fruit	no	1 week after full bloom	16.3823
SRR3384921	fruit	no	2 week after full bloom	12.0408
SRR3384920	fruit	no	3 week after full bloom	16.5778
SRR3384919	fruit	no	4 week after full bloom	19.174
SRR3384923	fruit	no	5 week after full bloom	16.9359
SRR3384918	fruit	no	6 week after full bloom	19.3559
SRR3384917	fruit	no	8 week after full bloom	20.6865
SRR3384916	fruit	no	10 week after full bloom	18.3871
SRR3384915	fruit	no	12 week after full bloom	24.4749
SRR3384914	fruit	no	14 week after full bloom	23.3314
SRR3384913	fruit	no	16 week after full bloom	21.0286
SRR3384912	fruit	no	18 week after full bloom	21.0797
SRR3384911	fruit	no	19 week after full bloom	18.4973
SRR3384910	fruit	no	20 week after full bloom	20.2086
SRR768128	whole fruit	no	25 days post anthesis	15.2365
SRR768129	whole fruit	no	35 days post anthesis	17.978
SRR768130	whole fruit	no	60 days post anthesis	20.4427
SRR768131	whole fruit	no	87 days post anthesis	24.5973
SRR7343308	immature fruit flesh	no	immature	22.7128
SRR7343309	immature fruit flesh	no	immature	22.2746
SRR6320494	ripe fruit flesh	no	mature	15.9618
SRR5405143	ripe fruit peel	no	mature	20.2749
SRR6320572	ripe fruit peel	no	mature	7.88255
SRR7403504	fruit	uninfected	mature	14.586
SRR7403506	fruit	uninfected	mature	16.0401
SRR7403507	fruit	uninfected	mature	14.8231
SRR7403500	fruit	infected with penicillium expansum	mature	37.8915
SRR7403501	fruit	infected with penicillium expansum	mature	49.6317
SRR7403508	fruit	infected with penicillium expansum	mature	41.6733
SRR7403502	fruit	infected with penicillium expansum	mature	26.3033
SRR7403503	fruit	infected with penicillium expansum	mature	28.575
SRR7403505	fruit	infected with penicillium expansum	mature	27.6922
SRR1613973	Central seeds	no	20DAPF	22.1658
SRR1613974	Central seeds	no	20DAPF	20.7322
SRR1613975	Central seeds	no	20DAPF	19.1393
SRR1613976	Lateral seeds	no	20DAPF	23.343
SRR1613977	Lateral seeds	no	20DAPF	21.1321
SRR1613978	Lateral seeds	no	20DAPF	19.2639
SRR3744786	stem	no	mature	15.4372
SRR3744787	stem	no	mature	14.969
SRR3744772	stem	no	mature	15.2066
SRX765691	seedling shoot apex	no	4-6 week old seedling	13.2668
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	17.2512
SRR1089478	leaf	Virus-free	plantlets	11.768
SRR1089477	leaf	ASGV-infected	plantlets	10.633
SRR767660	leaf	uninfected	fully developed	12.9821
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	9.46401
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	9.5538
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	37.2715
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	10.5625
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	10.4893
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	14.8822
SRR6308182	young leaf	no	immature leaves	14.5848
SRR3744769	leaf	no	mature	14.9009
SRR3744770	leaf	no	mature	15.1817
SRR3744771	leaf	no	mature	14.9641
SRR5405145	leaf	no	mature	5.53237
SRR6320561	leaf	no	mature	12.3493