Gene detail

Detail information of MD11G1051600 Annotation

Gene ID	Annotation
MD11G1051600	NB-ARC domain-containing disease resistance protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1051600	mRNA	Chr11	4414978	4421302	+

Sequences

CDS:

MD11G1051600

TCAATTATTTGGATGATGCACCATCTTATTCACGTTATGAAAAGTTAAACCTACCGGCATCTGTTGTCTATCAAATCATTTTCCATTGCTCTTGAATTGCAACTGTAATTTGTATCGAAGAGAGAAGTTAAACATTGTGATTAGCTGAGCTGAGTTGAGTAGGGGAATTGAAGGAATGGCAGCTGAAGCTGTGCTTACTTTTGCTGCGGAGGGAATACTGGAAAAGGTGCTTTCACTTGCTGAGAAAGAATTCAGTCTTGCATGGGGTTTCAAAGCTGAACTTCGAAAGCTTAAAGAGTCATTCACCACCATTGAACTTTTATTGAATGATGTTGCCTACAAACCACAAGCTCCGGCAATAGAGGAATGGGTGAAGAAACTCAAAGGCGTAGCTGAAGATGCTGAGGATGTCTTGGATGAATTCAAGTACGAAGTTGATCGGCGTAAAGTCGAAATCCAAAACCATATGAAGAGAAAGGTTCTGAACTTCTTTTCACTCTCCAATCCACTTGCATTTCGTCTTCAAATGGCGCATAAAATTCAGAAGATCAATGCATCCTTGGTGGATCTCGAGAGGAAAGCATCTCCTCTTGGACTGGTTTCCAGGAATACAGATGCAACCCGTCAGGGAATTACATGGGACAGACGAACCGACTCACTCATTGGCAAAGATGAAATAACTGTTGGAAGGAAAGATGATGTGTCGAATATAGTTAAAACCTTGACCGACTCCAAAAGCAACCAAGAAAATCTTGCGGTTATGGCCATTGTGGGAATGGGAGGCCTCGGAAAAACAACTTTGGCCAAGTCGGTTTACAATGAGAATTCGATACAAAAGTTTTTTGACAAGAGAATATGGATTTGTGTATCGAACCCTTTCGACGTCAATTTAATTCTACTCCATATGTTAGAACATCTCAATCCGGCAAAAGCCCCTTCGAAAGATAACAAGAATGCTCTTCTTGAGTTCCTTAACGAAGAGTTGAAAGATAAAAGGTACTTACTTGTACTTGATGACGTTTGGAACGAAGATCTCAAAATATGGGATAATTTAATGGAATGTTTGTCAAAGCTTAATTCTACTGGGGGTTCCAAAATTATTGTTACTACTCGCAGTGGCAAAGTCGCATCAATCTTAAAAAAGCTACTTCTACAATATGAATTGGGGGAACTTTCTGTGGATGAATGTTGGTCTATCATGAAAGATAAAGCTTTCCCCATTAACGGTGTTCCAGAGTTCAATAGCAATGCTTCGACGTTCGAGACAATTGGAAAAGAAATTGCTAAAAATTGTGGTGGTGTTCCATTAGTGGCAAAGGTTTTGGGAGGTATTTTGCGCACTAAAAAAAGTATTGAAGAATGGTCGTCATTTAAAAACAGTAGAATATGGAACAACCATTCAAAAGAAGAAGATAGAATTATGTCAATTCTGAGGTTGAGTTTTGACAACTTAGAATCACCATCATTGAAGCAATGTTTTGCATATTGCTCAATGTTCGAGAAAGATGCTGAAATTCAAAGAGACAACTTGATTCAACTTTGGATGGCTCAAGGATTACTCCGTTCTTGGCCTAATGGAATTAAAGATATGGAGGACATAGGCAATGAATATTTTGATATTCTATTGCAGAGCTCCTTATTTCAAGATGCTACAATGAGTGACAATGGCATAGTTAGTGAATGCAAGATGCATGATCTTGTGCACGATCTTGCAGAACATCTATTCAAATCTGAAGGCTTGACAGGAGACTTATGTGGCATAGATAATACACTTGAGATTCGACATGTTGCTCGGGTTTCTACTTCTACACTGGAAAAATTTCCAGAAAGAAGTGCTGGGAAATTGCGGTCACTGTTTTCTGATGATGGTGAAGTTACTACTAACATTCTTCCACGTTTCAAAGCTTTACGTGTCTTGAATTTAAGTGAAGCTAATATTGAAGAACTTCCAGATTCAATTGGTAGGCTGAAACATTTGAGGTATCTTGACATTTCCAAAACAAGATTCAAAGCACTCCCCAAGTCTATAGGCAAGCTCTATAACCTCCAGACGTTAAGAGGAACACAATGTGCCCTTAAAGAGTTTCCAAAAGAACTGCTAAACTTGATCAACCTAAGGCATATTTATTTTTATGCGAGTACAAAATTCCCACAGGGGATAGGGCGGCTGACTTACCTTCGAACATTATGTTACTTTTCGGTGGGTAATGAGATTGGTCGTCGAATCGAAGAGTTGGCTGGCTTGAATCAATTGAGAGGTGAATTAATCATTTGTGATTTGGAGCACGTAGAGAACGGAGAAGAAGCAGAGAAAGCTAAGTTAGAGGAAAAGACGAAAGTACGCCATTTACACTTCAATTGGACAAAAGATAGGTCAACAACTGACAACAACGAGGAGGAAGGTGTCCTAGAAGGTCTCCGACCACATCTTGAGTTGGAGAGCTTAAGTATTGAAAACTTCATGGGCAATAAGTTTCCACCGTGGATGATGAGTGGGTCATTACTAAACAACTTGAAAAAGATTAAATTACTTGGATGCCACAAATGTGAAGGAGTCCCACCATTGAGTTTATGGGCCTCTCTCCAGAATTTGAGTATAGAGAATTGCAATGGATTATCAGGCCCGTTGAGTTTAGGGGCCTCTCTCGTGGAAGTGATTTTACGGAATTGCAATGGATTATCTGGCTCATTGAGTTTAGGGGCCTCTCTTGTGGAATTGACAATAGAGGGTTGCAATAATCTGACATCAATTGAAATGAAAGGCAGCGGGTCCCTCACCGCCTCTCTTCAGAAATTGAGAATCTGGTTTTGTAATGAATTATCAAGCATACCTGCTCTTCCACAACAATGTCCCTCTCTTCAAAAATTGAGTATATTGGGATGCCCAAAGCTATCATGGTTTGGTGTCAAAAGTAGTAGAGTTGAGAAGGAGGAGAAGTGCATTAGTCTACAATCTACTTCAGATTTGCGCACCATGACCTCCCTTCGACGTATGTGGATTGAAAGATGTGAAAGATTAGAAAGTTGGGTGAGCAGCCTGCAATTCCCACTCTCTCTTGAGTATCTGATAATAGTCAAAATCCCTAATTTAGAGATTCTTCCAAGTTTAGACCATCTTAATTCTCTCAGGTATTTGGAAATCGGTGGGTTCTGGGAGGAGCTCGATTCCTTCCCTGATTTTGAAGTTGGATCATTAATGCATCTCACAAGCTTACAGTTGAATGGTTGGCCTAAGCTCAAGTCTCTGCCTCAACAAATTCAACACCTCACTTCTCTAACAGATTTGTGGATAGTTAACTTTGAGGGAGTGGAGACTTTGCCAGAATGGTTGGGTAGCCTTACATCCCTTACATATCTGAGGATTCAAGGTTGCAAGAATCTGATGAATTTACCAAGTGTCCAAGCTATGCAACGCCTCACCAAATTACAAACTCTAAGGATTTATAATTGTCATCCCCTTCTAAATGAAAGATGCAGGAGGGACAGCGGCACAGATTGGCCTAAGATTTCTCACATTCCATATTTCAGAAAGACTTGTGAGACAAGAGTTGGATTGAAGCTATGCAACGCCTTGCGATACTACAACAAATGTGTATTGGGAAAACCAAATATCATGGTGTGCAAGGCCACACTTCTCCGAGATTACTTGTATTCCAGTTTTATGTACAAACGACTCCAAATGGCTCAAACTTTCGCATTGAAATTAAGTCATTGCCATCTATATTTCTTTTGCTATGCTTTGGCGGTTTTCATGATGCTCAATAGCTATAAACTGACTCCAGGTACTGATGCGCACGATATTAATTCTCTCGCTCTACCTTCATTTCTCAATAATATACCTCTTTTTATAGTCCTTGGGCATTCTCCTTTACATGTTATCTTTCTTAATTCCGGCAACATCAATCAATATTTTAACTTTCTTTAGTTCATCTGTATGAGTGCTGAACCACTAGCTTGATCACCCATCATGGTATTGAATCTTGTTTAATCACACACTGCCAGCACCCAAGTAGTGTTAGATGAGTAATGCCAAGAATTGCCATCAAGCATGTTCATATAATATTTAGAACTACTGCAATTACTTTCTGTTTGTTATTGTTATCCTTATGAAGATTTTGGACTGATATTTTTATGGTTACTTGTGATTTATGA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Populus trichocarpa	Potri.014G002200.1	1	LRR and NB-ARC domains-containing disease resistance protein
Populus trichocarpa	Potri.014G002900.2	1	LRR and NB-ARC domains-containing disease resistance protein
Populus trichocarpa	Potri.003G017200.1	1	LRR and NB-ARC domains-containing disease resistance protein
Populus trichocarpa	Potri.014G009300.1	1	NB-ARC domain-containing disease resistance protein
Populus trichocarpa	Potri.003G015500.1	0.908	NB-ARC domain-containing disease resistance protein
Populus trichocarpa	Potri.014G007900.1	0.725	NB-ARC domain-containing disease resistance protein
Populus trichocarpa	Potri.014G003600.1	0.715	LRR and NB-ARC domains-containing disease resistance protein
Populus trichocarpa	Potri.014G005400.2	0.703	LRR and NB-ARC domains-containing disease resistance protein
Populus trichocarpa	Potri.014G001900.1	0.701	NB-ARC domain-containing disease resistance protein
Populus trichocarpa	Potri.004G169800.1	0.686	LRR and NB-ARC domains-containing disease resistance protein
Populus trichocarpa	Potri.014G009600.1	0.65	NB-ARC domain-containing disease resistance protein
Populus trichocarpa	Potri.004G170400.1	0.644	NB-ARC domain-containing disease resistance protein
Populus trichocarpa	Potri.004G170700.1	0.636	NB-ARC domain-containing disease resistance protein
Populus trichocarpa	Potri.003G026900.1	0.635	LRR and NB-ARC domains-containing disease resistance protein
Populus trichocarpa	Potri.014G003200.1	0.633	LRR and NB-ARC domains-containing disease resistance protein

Gene Ontology

GO term	Description	Category
GO:0006952	defense response	biological_process
GO:0043531	ADP binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.18	NB-ARC	173	462	1.50E-64

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.06571
SRR5252888	dormant buds	no	dormant buds(0 month)	40.3
SRR5252889	dormant buds	no	dormant buds(0 month)	45.2746
SRR5252886	dormant buds	no	dormant buds(1 months)	27.6552
SRR5252887	dormant buds	no	dormant buds(1 months)	26.9891
SRR5252884	dormant buds	no	dormant buds(2 months)	29.1653
SRR5252882	dormant buds	no	dormant buds(3 months)	28.2384
SRR5252883	dormant buds	no	dormant buds(3 months)	27.8789
SRR5252880	dormant buds	no	dormant buds(4 months)	39.8674
SRR5252881	dormant buds	no	dormant buds(4 months)	38.7983
SRR5252878	bud break	no	bud break	59.2817
SRR5252879	bud break	no	bud break	25.6785
SRR3744766	flower	no	mature	18.0358
SRR3744767	flower	no	mature	20.7108
SRR3744768	flower	no	mature	20.5024
SRR6308190	stigmas	no	open flowers	2.73291
SRR6308181	styles	no	open flowers	2.74725
SRR6308188	filaments	no	open flowers	1.84638
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.73705
SRR6308192	pollen	no	open flowers	0.491957
SRR6308191	petals	no	open flowers	1.00649
SRR6308194	sepals	no	open flowers	5.36381
SRR6308193	receptacles	no	open flowers	3.05601
SRR6308189	ovaries	no	open flowers	4.83518
SRR3384922	fruit	no	1 week after full bloom	0.758475
SRR3384921	fruit	no	2 week after full bloom	0.862053
SRR3384920	fruit	no	3 week after full bloom	0.957852
SRR3384919	fruit	no	4 week after full bloom	1.65295
SRR3384923	fruit	no	5 week after full bloom	1.54019
SRR3384918	fruit	no	6 week after full bloom	1.20195
SRR3384917	fruit	no	8 week after full bloom	1.83738
SRR3384916	fruit	no	10 week after full bloom	1.62443
SRR3384915	fruit	no	12 week after full bloom	1.45131
SRR3384914	fruit	no	14 week after full bloom	1.33148
SRR3384913	fruit	no	16 week after full bloom	0.85134
SRR3384912	fruit	no	18 week after full bloom	1.07226
SRR3384911	fruit	no	19 week after full bloom	0.746111
SRR3384910	fruit	no	20 week after full bloom	2.03675
SRR768128	whole fruit	no	25 days post anthesis	14.0524
SRR768129	whole fruit	no	35 days post anthesis	1.43258
SRR768130	whole fruit	no	60 days post anthesis	3.28674
SRR768131	whole fruit	no	87 days post anthesis	7.67561
SRR7343308	immature fruit flesh	no	immature	25.6254
SRR7343309	immature fruit flesh	no	immature	17.7406
SRR6320494	ripe fruit flesh	no	mature	8.62254
SRR5405143	ripe fruit peel	no	mature	10.7036
SRR6320572	ripe fruit peel	no	mature	5.36978
SRR7403504	fruit	uninfected	mature	4.38861
SRR7403506	fruit	uninfected	mature	4.60249
SRR7403507	fruit	uninfected	mature	5.14712
SRR7403500	fruit	infected with penicillium expansum	mature	0.0272658
SRR7403501	fruit	infected with penicillium expansum	mature	0.0404618
SRR7403508	fruit	infected with penicillium expansum	mature	0.0583372
SRR7403502	fruit	infected with penicillium expansum	mature	0.0676548
SRR7403503	fruit	infected with penicillium expansum	mature	0.100753
SRR7403505	fruit	infected with penicillium expansum	mature	0.0226413
SRR1613973	Central seeds	no	20DAPF	1.56356
SRR1613974	Central seeds	no	20DAPF	2.44918
SRR1613975	Central seeds	no	20DAPF	1.35233
SRR1613976	Lateral seeds	no	20DAPF	1.50615
SRR1613977	Lateral seeds	no	20DAPF	1.39169
SRR1613978	Lateral seeds	no	20DAPF	1.83823
SRR3744786	stem	no	mature	30.5584
SRR3744787	stem	no	mature	32.4395
SRR3744772	stem	no	mature	35.6394
SRX765691	seedling shoot apex	no	4-6 week old seedling	11.5372
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.45211
SRR1089478	leaf	Virus-free	plantlets	0.988848
SRR1089477	leaf	ASGV-infected	plantlets	2.69884
SRR767660	leaf	uninfected	fully developed	0.446103
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.594956
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.436813
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.80896
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.284334
SRR6308182	young leaf	no	immature leaves	5.92883
SRR3744769	leaf	no	mature	28.2352
SRR3744770	leaf	no	mature	29.7197
SRR3744771	leaf	no	mature	30.139
SRR5405145	leaf	no	mature	7.67189
SRR6320561	leaf	no	mature	4.28844