Gene detail

Detail information of MD11G1052900 Annotation

Gene ID	Annotation
MD11G1052900	cinnamate-4-hydroxylase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1052900	mRNA	Chr11	4505770	4510093	+

Sequences

CDS:

MD11G1052900

CTCCCAACTCCCTCCACCTACCCGCTCCTTTACCTACTCCCCGCACGCCCGCACACTTCTCTCCAACCCCATTTCCGTCAAAACTAACGCCGTTACACTCCGCATTCACGCCTTTACGTCTTCCAACCACCCCCCACAGACACATGACCACGCAACCCACCTAACGTCCGCGAAACCGTCCCTCTATAAAACGCAAACCCAAAGCCCCCCAAAACGTCAGTTCACTCTCCCACACAACTCTCTGCATTTCTGCTCTGCCCACCCACTAAATCACTTGACACACCCACAGAGGCAATGGACCTCCTCCTCCTGGAAAAGACCCTTCTGGGTCTCTTCGTCGCCGTCATCGTCGCCATCGCCATTTCGAAACTCCGCGGCAAGAAATTCAAGCTCCCGCCGGGTCCCATACCCGTACCCGTATTCGGAAACTGGCTCCAGGTCGGTGACGACCTCAACCACCGCAACCTCACCGACATGGCCAAGAAATTCGGCGACTGCTTCCTCCTCCGCATGGGGCAGCGCAACCTCGTCGTCGTCTCCTCGCCGGAGCTGGCCAAGGAGGTCCTCCACACCCAGGGAGTCGAATTCGGGTCGAGGACCCGAAACGTCGTCTTTGATATTTTCACCGGTGAAGGCCAGGACATGGTGTTCACCGTCTACGGCGAGCACTGGCGGAAAATGCGGCGTATCATGACCGTCCCCTTCTTCACCAACAAGGTCGTCCAGCAGTACCGCTACGGATGGGAATCGGAGGCGGCGGCGGTCGTCGAGGACGTGAAAAAGCACCCCGAGGCGGCGACCAGCGGAATGGTGCTGCGGAGGCGGCTGCAGCTGATGATGTACAACAACATGTACAGAATCATGTTCGACCGGCGATTCGAGAGCGAGGAGGATCCCCTGTTCGTGAAGCTCAAGGCGCTGAATGGGGAGAGGAGCCGATTGGCGCAGAGCTTCGATTACAACTACGGCGATTTTATCCCGATCTTAAGGCCGTTTTTGAGAGGGTATTTGAAGATCTGCAAGGAAGTGAAGGAGAAGAGGATTCAGCTGTTTAAGGACTATTTCGTGGACGAGAGGAAGAAACTTTCGAGCACAAAGCCTACAACAAACGAAGGGTTGAAATGCGCCATCGATCACATCCTCGACGCGCAGCAGAAAGGAGAAATCAACGAGGACAACGTTCTCTACATCGTCGAGAACATCAACGTTGCTGCTATTGAAACCACGTTGTGGTCGATCGAGTGGGGAATTGCCGAGCTAGTGAACCACCCCGAAATCCAGAAGAAGTTGAGGAATGAACTCGACACAGTCCTCGGCCGCGGAGTTCAGATCACAGAGCCCGACGTTCCTAAACTTCCCTACCTGCAAGCCGTGGTCAAGGAGACTCTCCGACTTCGCATGGCAATCCCGCTCCTTGTCCCCCACATGAACCTCCAGGATGCCAAGCTCGGGGGGTTTGATATTCCGGCGGAGAGCAAGATATTGGTGAATGCTTGGTGGTTGGCAAACAACCCTGCCCTGTGGAAGAAGCCAGAAGAGTTTAGGCCCGAGAGGTTTTTGGAGGAGGAGTCGAAGGTGGAGGCTAACGGGAACGACTTCAGGTATCTCCCGTTTGGTGTTGGGAGGAGAAGTTGTCCTGGGATTATTTTGGCACTGCCAATCCTGGGCATTACAATTGGACGTTTAGTCCAGAACTTCGAGCTTCTGCCTCCGCCAGGACAGTCCAAGCTCGACACCTCGGAGAAAGGTGGACAATTCAGCCTGCACATCCTGAAGCACTCCACCATTGTGATGAAGCCGAGGGCGTAGATTGATGCTTGGGGAGTAAGATTTTGATTCTATGAAATATGATGTTTGGGTTGTGAAAATGTAAATTTATCAACTTTTTTCGTTCTTGTTCTTTGTTTACTTAGATTTATGAACTTCGAATTAATGGAAGGTTCAAGTAATAAATTTCTTTTTATTAATAAGTATTTGGCCTAATCAGATAAACAGTCCTCGTGGTGATAAGGTAATCGGAAGATAGTTCTTGTGGTAAAAAAATTAGGATTTAAACCCTTGTGGGAGAGTCCGTTGGCAAATTTGGTCCAAAATTGATTTGTCCGTTACTTGTCTGTTAAGTATAGGGATAAAAATGTATTTTAAGGTGTACGCCTTCTTCTTCTT

Protein:

Gene family

Gene family	Subfamily
Cytochrome P450 Family	CYP73A

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G30490.1	1	ATC4H;C4H;CYP73A5;REF3\|CINNAMATE 4-HYDROXYLASE;cinnamate-4-hydroxylase;;REDUCED EPRDERMAL FLUORESCENCE 3
Prunus persica	Prupe.6G040400.1.p	1	cinnamate-4-hydroxylase
Pyrus x bretschneideri	Pbr017290.1	1	-
Rosa multiflora	Rmu_sc0005684.1_g000008.1	1	-
Rubus occidentalis	Ro03_G10602	1	-
Fragaria vesca	mrna28093.1	1	cinnamate-4-hydroxylase
Vitis vinifera	GSVIVT01024554001	1	cinnamate-4-hydroxylase
Populus trichocarpa	Potri.013G157900.2	1	cinnamate-4-hydroxylase
Populus trichocarpa	Potri.019G130700.1	0.605	cinnamate-4-hydroxylase
Nicotiana benthamiana	Niben101Scf02316g01002.1	1	cinnamate-4-hydroxylase LENGTH=505
Nicotiana benthamiana	Niben101Scf00262g05006.1	0.68	cinnamate-4-hydroxylase LENGTH=505
Oryza sativa	LOC_Os01g60450.1	1	"cytochrome P450, putative"
Oryza sativa	LOC_Os05g25640.1	1	"cytochrome P450, putative, expressed"
Zea mays	GRMZM2G010468_P01	1	Putative cytochrome P450 superfamily protein

Gene Ontology

GO term	Description	Category
GO:0020037	heme binding	molecular_function
GO:0055114	oxidation-reduction process	biological_process
GO:0005506	iron ion binding	molecular_function
GO:0009055	electron carrier activity	molecular_function

KEGG

KO	Description	Enzyme
K00487	trans-cinnamate 4-monooxygenase	EC:1.14.13.11

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.18	p450	34	495	2.10E-117

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	81.6794
SRR5252888	dormant buds	no	dormant buds(0 month)	55.2253
SRR5252889	dormant buds	no	dormant buds(0 month)	52.0649
SRR5252886	dormant buds	no	dormant buds(1 months)	65.6872
SRR5252887	dormant buds	no	dormant buds(1 months)	38.4786
SRR5252884	dormant buds	no	dormant buds(2 months)	20.2933
SRR5252882	dormant buds	no	dormant buds(3 months)	16.5113
SRR5252883	dormant buds	no	dormant buds(3 months)	10.0648
SRR5252880	dormant buds	no	dormant buds(4 months)	29.5306
SRR5252881	dormant buds	no	dormant buds(4 months)	18.1092
SRR5252878	bud break	no	bud break	82.7149
SRR5252879	bud break	no	bud break	112.85
SRR3744766	flower	no	mature	25.1683
SRR3744767	flower	no	mature	24.2579
SRR3744768	flower	no	mature	25.2958
SRR6308190	stigmas	no	open flowers	105.97
SRR6308181	styles	no	open flowers	115.902
SRR6308188	filaments	no	open flowers	66.3334
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	72.9539
SRR6308192	pollen	no	open flowers	0.98757
SRR6308191	petals	no	open flowers	65.6746
SRR6308194	sepals	no	open flowers	99.2341
SRR6308193	receptacles	no	open flowers	44.7488
SRR6308189	ovaries	no	open flowers	105.829
SRR3384922	fruit	no	1 week after full bloom	122.583
SRR3384921	fruit	no	2 week after full bloom	269.808
SRR3384920	fruit	no	3 week after full bloom	666.182
SRR3384919	fruit	no	4 week after full bloom	527.561
SRR3384923	fruit	no	5 week after full bloom	582.28
SRR3384918	fruit	no	6 week after full bloom	558.894
SRR3384917	fruit	no	8 week after full bloom	398.635
SRR3384916	fruit	no	10 week after full bloom	435.887
SRR3384915	fruit	no	12 week after full bloom	394.489
SRR3384914	fruit	no	14 week after full bloom	371.507
SRR3384913	fruit	no	16 week after full bloom	312.63
SRR3384912	fruit	no	18 week after full bloom	317.015
SRR3384911	fruit	no	19 week after full bloom	348.608
SRR3384910	fruit	no	20 week after full bloom	357.912
SRR768128	whole fruit	no	25 days post anthesis	377.596
SRR768129	whole fruit	no	35 days post anthesis	382.709
SRR768130	whole fruit	no	60 days post anthesis	653.532
SRR768131	whole fruit	no	87 days post anthesis	486.744
SRR7343308	immature fruit flesh	no	immature	342.047
SRR7343309	immature fruit flesh	no	immature	471.468
SRR6320494	ripe fruit flesh	no	mature	238.211
SRR5405143	ripe fruit peel	no	mature	213.67
SRR6320572	ripe fruit peel	no	mature	486.949
SRR7403504	fruit	uninfected	mature	358.148
SRR7403506	fruit	uninfected	mature	369.684
SRR7403507	fruit	uninfected	mature	378.27
SRR7403500	fruit	infected with penicillium expansum	mature	61.7101
SRR7403501	fruit	infected with penicillium expansum	mature	54.3097
SRR7403508	fruit	infected with penicillium expansum	mature	63.1361
SRR7403502	fruit	infected with penicillium expansum	mature	90.4912
SRR7403503	fruit	infected with penicillium expansum	mature	91.9846
SRR7403505	fruit	infected with penicillium expansum	mature	93.452
SRR1613973	Central seeds	no	20DAPF	19.6897
SRR1613974	Central seeds	no	20DAPF	19.2495
SRR1613975	Central seeds	no	20DAPF	23.349
SRR1613976	Lateral seeds	no	20DAPF	26.8387
SRR1613977	Lateral seeds	no	20DAPF	24.0378
SRR1613978	Lateral seeds	no	20DAPF	20.7579
SRR3744786	stem	no	mature	23.7411
SRR3744787	stem	no	mature	23.0653
SRR3744772	stem	no	mature	23.3503
SRX765691	seedling shoot apex	no	4-6 week old seedling	260.009
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	346.71
SRR1089478	leaf	Virus-free	plantlets	46.132
SRR1089477	leaf	ASGV-infected	plantlets	53.4475
SRR767660	leaf	uninfected	fully developed	96.232
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	694.002
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	150.162
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	378.604
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	204.491
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	130.943
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	85.9263
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	26.2152
SRR6308182	young leaf	no	immature leaves	241.94
SRR3744769	leaf	no	mature	13.4056
SRR3744770	leaf	no	mature	13.7981
SRR3744771	leaf	no	mature	15.668
SRR5405145	leaf	no	mature	73.2499
SRR6320561	leaf	no	mature	83.9644