Gene detail

Detail information of MD11G1056400 Annotation

Gene ID	Annotation
MD11G1056400	Excinuclease ABC

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0098	proton-transporting V-type ATPase endoplasmic reticulum

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1056400	mRNA	Chr11	4798964	4801103	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G30350.2	1	"Excinuclease ABC, C subunit, N-terminal"
Pyrus communis	PCP023786.1	1	-
Pyrus x bretschneideri	Pbr035734.1	1	-
Rosa multiflora	Rmu_sc0008676.1_g000007.1	1	-
Rubus occidentalis	Ro03_G10628	1	-
Fragaria vesca	mrna28135.1	1	"Excinuclease ABC, C subunit, N-terminal"
Vitis vinifera	GSVIVT01024586001	1	"Excinuclease ABC, C subunit, N-terminal"
Populus trichocarpa	Potri.019G127600.1	1	"Excinuclease ABC, C subunit, N-terminal"
Nicotiana benthamiana	Niben101Scf17482g00013.1	1	Structure-specific endonuclease subunit SLX1
Oryza sativa	LOC_Os07g12710.1	1	"GIY-YIG catalytic domain containing protein, putative, expressed"
Zea mays	GRMZM2G138943_P01	1	"Excinuclease ABC, C subunit, N-terminal "

Gene Ontology

GO term	Description	Category
GO:0017108	5'-flap endonuclease activity	molecular_function
GO:0006281	DNA repair	biological_process
GO:0033557	Slx1-Slx4 complex	cellular component

KEGG

KO	Description	Enzyme
K15078	structure-specific endonuclease subunit SLX1	EC:3.6.1.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01541.20	GIY-YIG	33	104	7.10E-13

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	5.42685
SRR5252888	dormant buds	no	dormant buds(0 month)	4.5461
SRR5252889	dormant buds	no	dormant buds(0 month)	4.42684
SRR5252886	dormant buds	no	dormant buds(1 months)	5.52383
SRR5252887	dormant buds	no	dormant buds(1 months)	6.6713
SRR5252884	dormant buds	no	dormant buds(2 months)	6.10833
SRR5252882	dormant buds	no	dormant buds(3 months)	4.41666
SRR5252883	dormant buds	no	dormant buds(3 months)	7.14142
SRR5252880	dormant buds	no	dormant buds(4 months)	4.55004
SRR5252881	dormant buds	no	dormant buds(4 months)	4.57689
SRR5252878	bud break	no	bud break	4.6736
SRR5252879	bud break	no	bud break	2.59126
SRR3744766	flower	no	mature	2.90768
SRR3744767	flower	no	mature	3.46678
SRR3744768	flower	no	mature	4.10401
SRR6308190	stigmas	no	open flowers	1.23844
SRR6308181	styles	no	open flowers	1.83813
SRR6308188	filaments	no	open flowers	4.0741
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	7.34488
SRR6308192	pollen	no	open flowers	35.8834
SRR6308191	petals	no	open flowers	1.11805
SRR6308194	sepals	no	open flowers	1.56532
SRR6308193	receptacles	no	open flowers	2.30447
SRR6308189	ovaries	no	open flowers	2.49625
SRR3384922	fruit	no	1 week after full bloom	6.40263
SRR3384921	fruit	no	2 week after full bloom	5.63099
SRR3384920	fruit	no	3 week after full bloom	5.46671
SRR3384919	fruit	no	4 week after full bloom	7.2233
SRR3384923	fruit	no	5 week after full bloom	7.98625
SRR3384918	fruit	no	6 week after full bloom	7.39826
SRR3384917	fruit	no	8 week after full bloom	7.00111
SRR3384916	fruit	no	10 week after full bloom	6.41316
SRR3384915	fruit	no	12 week after full bloom	6.27733
SRR3384914	fruit	no	14 week after full bloom	5.21838
SRR3384913	fruit	no	16 week after full bloom	4.96439
SRR3384912	fruit	no	18 week after full bloom	3.54958
SRR3384911	fruit	no	19 week after full bloom	4.96484
SRR3384910	fruit	no	20 week after full bloom	2.77666
SRR768128	whole fruit	no	25 days post anthesis	3.4478
SRR768129	whole fruit	no	35 days post anthesis	5.28306
SRR768130	whole fruit	no	60 days post anthesis	5.46216
SRR768131	whole fruit	no	87 days post anthesis	3.66693
SRR7343308	immature fruit flesh	no	immature	2.36514
SRR7343309	immature fruit flesh	no	immature	7.86964
SRR6320494	ripe fruit flesh	no	mature	4.13616
SRR5405143	ripe fruit peel	no	mature	3.08546
SRR6320572	ripe fruit peel	no	mature	3.90016
SRR7403504	fruit	uninfected	mature	4.03306
SRR7403506	fruit	uninfected	mature	4.61211
SRR7403507	fruit	uninfected	mature	3.48057
SRR7403500	fruit	infected with penicillium expansum	mature	0.478149
SRR7403501	fruit	infected with penicillium expansum	mature	0.851475
SRR7403508	fruit	infected with penicillium expansum	mature	0.511518
SRR7403502	fruit	infected with penicillium expansum	mature	0.632765
SRR7403503	fruit	infected with penicillium expansum	mature	1.06012
SRR7403505	fruit	infected with penicillium expansum	mature	0.476461
SRR1613973	Central seeds	no	20DAPF	5.8203
SRR1613974	Central seeds	no	20DAPF	4.9267
SRR1613975	Central seeds	no	20DAPF	5.52147
SRR1613976	Lateral seeds	no	20DAPF	4.64825
SRR1613977	Lateral seeds	no	20DAPF	5.38239
SRR1613978	Lateral seeds	no	20DAPF	5.5568
SRR3744786	stem	no	mature	7.03222
SRR3744787	stem	no	mature	6.37946
SRR3744772	stem	no	mature	5.96689
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.46242
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.28311
SRR1089478	leaf	Virus-free	plantlets	1.27946
SRR1089477	leaf	ASGV-infected	plantlets	1.68718
SRR767660	leaf	uninfected	fully developed	1.55691
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.05922
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.86568
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.95835
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.65442
SRR6308182	young leaf	no	immature leaves	3.62826
SRR3744769	leaf	no	mature	2.70821
SRR3744770	leaf	no	mature	2.69053
SRR3744771	leaf	no	mature	2.84828
SRR5405145	leaf	no	mature	2.50859
SRR6320561	leaf	no	mature	2.00863