Gene detail

Detail information of MD11G1101900 Annotation

Gene ID	Annotation
MD11G1101900	Leucine-rich repeat protein kinase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0187	Leucine Rich Repeat Kinase XI & XII cellular response to nitrogen starvation regulation of defense response oligopeptide transport protein phosphorylation systemic acquired resistance protein tyrosine kinase activity ATP binding plasmodesma transmembrane receptor protein tyrosine kinase signaling pathway

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1101900	mRNA	Chr11	8520925	8523873	+

Sequences

CDS:

MD11G1101900

ATGGGGGTTTTGGTTTTGAAATTGATCTTAATATACTTGCTTTTCAGTGCAGTGTTCGTTTGCTGTTGGAGCTCCCTGCAATCAGGACTCGGAAGGAATGCGACGGATAGGCTGGCGCTGCTTGCCATCAAAGCTCACATAAAGCAAGATCTCCATAATTACAACCTGATGAGCTCCTGGAACGAATCCACTCACTTTTGCATGTGGCATGGTGTGACGTGCAGTCAACGACATCGCCAAAGGGTCACCAAGCTGGACCTGCAATCTCAAAATCTGGTAGGGAAACTATCCTCAAACATTGGAAATCTAAGTTTTCTAAGGGAGCTGTGGCTGCAAAACAACTTCTTCAGTCATGAAATTCCTCCACAAATTGGGAATTTGCGTAGATTGCAAGTATTACGATTAGACGCTAACTCGTTTAGTGGCAGTATTCCACACAATATATCATATTGCTTCAACCTTATCCATGCGAATTTCACTCGCAACAAGTTGGTGGGTAAAATTCCTTCAGAAATTGGATTGCTGTCGAAGCTGCAAATGTTTGTATTGAAATTTAATAATGTAACGGGACAGGTCCCTCCTTCCTTGGGTAACCTTTCGTCTCTCCAGGGACTAAGTCTTGCTGGTAATAACTTGATGGGAAACATCCCCAGTTCTCTTGGCCAATTGAAAAAATTAACCTTCTTGGGATTGGGGTTAAATCAGTTGTCTGGTAGCATCCCTTCCTCCATTTATAACCTCTCTTCTCTTGTTACGTTTTCCATGCCAGCTAACCAAATTCAAGGGAGTATTCCATCAGATATTGGCAAAAGTCTTCCTAATCTCGAAATCTTCAACGTCGACTCTAACCAACTTACTGGGTCCATTCCTCCCTCAATATTCAATGTCACAAGTGTTTGGTTCTTTGACGTTGGGAGTAACAACCTAATCGGACAGGTACCGAGTCTCCAAAAGCTTCATAACCTCCTTTTTTTCAACATTCAATTTAATAATATTGGGAGCGGTAAAGATGGTGACTTAAGTTTTCTCTCGGACTTGACCAATGCCACGCAGTTAAAAGAGTTGATGATTAACAACAACAGTTTTGGAGGGACATTGCCCAAGTCAATATCCAATCTCTCAACCAAACTTGAATTGTTTTGGGTTGGCGATAACCAAATATATGGAAGTATCCCATCTGGGATAGGGAATCTGGTGAGCTTGGAAGGGTTGTATTTGGGGAATAATACGTTCACAGGTAACATCCCCTCTGACATGGGTAAGCTTTCAAACCTTGGAAAATTAGATATTGTCATGAACGAATTTTCAGGAAATATTCCTTCTTCCTTAAGAAATTTAACCAAGTTATTATATCTTGGGTTGGATAGAAATCATCTTGAGGGCAGCATTCCTTCAAGCCTAGGGGAATGCCATGGGTTGCAATGGTTGAATCTTTCTTATAATCTCCTTAATGGCACAATACCCAAACAAGTTTTTAGACTCTCTTCCTTATCAGTTGCTTTGGTCTTGTCTAATAACCTCTTCACAGGTTCCCTTCCCTCGGAGGTTGGGAATTTACAAAGTCTAAGTGAATTGGACGTTTCTGATAACATGTTATCTGGAGAACTCCCCAGTAGCCTTGGTGGTTGTGAGAGTTTAGAAGTCCTGCATTTGCAAGGAAACTTCTTCAACGGGTCCATTCCTTTGTCTATGAGTTCATGGTACCAACTGGAGGTGTTTTCAAAAAATGCGAGTGCTATTTCAGTTGTTGGTAACACTAATCTGTGCAGCCCTGTTGCTAATTTAAATCTTCCCAAGTGCAAGTCTAAAGAGACCAAGAAACGAAGATTGTCTCGTAGCTTGAAACTAATACTCCCTTTAGTATTTGGACTTACTCTTCTAGGAATAGCCATGGTGTTCTCCTATTTCTTTCTTTGTTCGTCAAGGAAGAAAAGGAAAGAAATTTCATTGAGCACTTTGGGGAACACTATTTTGCAAGTGTCATATGCTACTCTACTCAAAGCTACTGACGGGTTCTTAGAGGCTAATTTAATTGGTGCTGGTAGTTTTGGGTCTGTGTACAAGGGAGTTCTTGATGATGATGATAAAGCTCAACTTGTTGCCGTGAAGGTGTTTAACTTGTTACGCCATGGAGCTTCGAGGAGTTTCATAGCCGAATGTGAAGCTTTGAGAAATATTAGGCACCGAAATCTCGTCAAGACTATAACCGTGTGTTCAAGTGTTGATTTTCATGGTAATGATTTCAAGGCTCTAGTTTATGAGTTCATGGACAACGGGAGCTTAGAGGAGTGGCTGCATCCACCTACTGGAACTGAAGAGTTGAGAGATCATGTACCCAAGAAGTTAAGTCTTCTTCAGAGGCTAGAAATTGCCATTGGTGTTGCTTGTGCCCTAGATTATCTTCATAATCATTGTGAAACGCCAATAGTTCATTGTGATCTCAAGCCAAGCAACGTTCTCTTGGACAACAAACTGACTGGCCATGTTTCTGACTTTGGAATAGCAAGGTTTCTCTCACAAGTAACGAGTAATGTTTCAGCAATTCAAAGTCAGACAAGTTCCGCTGGAATAAGAGGAACGGTTGGTTATGCAGCTCCAGAGTATGGCATGGGGAGTGAGGTGTCAACGAATGGTGATGTCTATAGCTTTGGCATTCTCTTGTTGGAGATGTTTACAGGGAAGAGACCCACTGACAACATGTTTGGTGATAGCTAG

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:1.12.4

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Oryza sativa	LOC_Os06g38760.1	1	"retrotransposon protein, putative, unclassified"
Oryza sativa	LOC_Os02g12450.1	1	"receptor-like protein kinase 2 precursor, putative"

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	675	898	5.40E-38

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0146204
SRR5252888	dormant buds	no	dormant buds(0 month)	0.177008
SRR5252889	dormant buds	no	dormant buds(0 month)	0.136703
SRR5252886	dormant buds	no	dormant buds(1 months)	0.0749512
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0398292
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0.0347576
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0.0706683
SRR5252878	bud break	no	bud break	0.317074
SRR5252879	bud break	no	bud break	0.21096
SRR3744766	flower	no	mature	0.105829
SRR3744767	flower	no	mature	0.242646
SRR3744768	flower	no	mature	0.0809269
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0.043951
SRR6308188	filaments	no	open flowers	0.131726
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.136176
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.0435721
SRR6308189	ovaries	no	open flowers	0.0708549
SRR3384922	fruit	no	1 week after full bloom	0
SRR3384921	fruit	no	2 week after full bloom	0.0646413
SRR3384920	fruit	no	3 week after full bloom	0.0284589
SRR3384919	fruit	no	4 week after full bloom	0.0525837
SRR3384923	fruit	no	5 week after full bloom	0.0500066
SRR3384918	fruit	no	6 week after full bloom	0.0278338
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0.0248624
SRR768128	whole fruit	no	25 days post anthesis	0.108021
SRR768129	whole fruit	no	35 days post anthesis	0.0790818
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0.0350742
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0.0368498
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0.0263122
SRR1613977	Lateral seeds	no	20DAPF	0.0203546
SRR1613978	Lateral seeds	no	20DAPF	0
SRR3744786	stem	no	mature	2.57211
SRR3744787	stem	no	mature	2.73182
SRR3744772	stem	no	mature	2.9529
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.172827
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.243587
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.267995
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.228619
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.0887076
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.223487
SRR6308182	young leaf	no	immature leaves	0.219622
SRR3744769	leaf	no	mature	0.682585
SRR3744770	leaf	no	mature	0.61375
SRR3744771	leaf	no	mature	0.445558
SRR5405145	leaf	no	mature	1.22779
SRR6320561	leaf	no	mature	2.11848