Gene detail

Detail information of MD11G1112900 Annotation

Gene ID	Annotation
MD11G1112900	Ribosomal protein S8 family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1112900	mRNA	Chr11	10212528	10214338	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G07770.2	1	RPS15A\|ribosomal protein S15A
Arabidopsis thaliana	AT5G59850.1	1	Ribosomal protein S8 family protein
Arabidopsis thaliana	AT1G07770.1	1	RPS15A\|ribosomal protein S15A
Prunus persica	Prupe.2G230100.3.p	1	ribosomal protein S15A
Prunus persica	Prupe.2G230100.2.p	1	ribosomal protein S15A
Prunus persica	Prupe.6G083600.1.p	1	Ribosomal protein S8 family protein
Prunus persica	Prupe.6G083600.2.p	1	Ribosomal protein S8 family protein
Prunus persica	Prupe.2G230100.1.p	1	ribosomal protein S15A
Pyrus communis	PCP032604.1	1	-
Pyrus communis	PCP033148.1	1	-
Pyrus communis	PCP009259.1	1	-
Pyrus x bretschneideri	Pbr034000.1	1	-
Pyrus x bretschneideri	Pbr032337.1	1	-
Rosa multiflora	Rmu_sc0005045.1_g000038.1	1	-
Rubus occidentalis	Ro07_G34515	1	-
Rubus occidentalis	Ro04_G02530	1	-
Fragaria vesca	mrna13953.1	1	ribosomal protein S15A
Vitis vinifera	GSVIVT01016595001	1	ribosomal protein S15A
Vitis vinifera	GSVIVT01025622001	1	ribosomal protein S15A
Populus trichocarpa	Potri.003G114800.1	1	ribosomal protein S15A
Populus trichocarpa	Potri.001G118100.3	1	ribosomal protein S15A
Populus trichocarpa	Potri.010G208700.3	1	Ribosomal protein S8 family protein
Nicotiana benthamiana	Niben101Scf16439g00004.1	1	30S ribosomal protein S8
Nicotiana benthamiana	Niben101Scf02736g07003.1	1	30S ribosomal protein S8
Nicotiana benthamiana	Niben101Scf07775g00009.1	1	30S ribosomal protein S8
Nicotiana benthamiana	Niben101Scf02452g01003.1	1	30S ribosomal protein S8
Nicotiana benthamiana	Niben101Scf02597g00003.1	1	30S ribosomal protein S8
Nicotiana benthamiana	Niben101Scf05926g01002.1	1	30S ribosomal protein S8
Oryza sativa	LOC_Os02g27760.1	1	"40S ribosomal protein S15a, putative, expressed"
Oryza sativa	LOC_Os07g10720.1	1	"40S ribosomal protein S15a, putative, expressed"
Zea mays	GRMZM2G083497_P01	1	40S ribosomal protein S15a;

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02957	small subunit ribosomal protein S15Ae	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00410.15	Ribosomal_S8	6	130	4.50E-33

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	116.596
SRR5252888	dormant buds	no	dormant buds(0 month)	64.5593
SRR5252889	dormant buds	no	dormant buds(0 month)	68.5192
SRR5252886	dormant buds	no	dormant buds(1 months)	64.8638
SRR5252887	dormant buds	no	dormant buds(1 months)	58.4507
SRR5252884	dormant buds	no	dormant buds(2 months)	64.2439
SRR5252882	dormant buds	no	dormant buds(3 months)	66.4983
SRR5252883	dormant buds	no	dormant buds(3 months)	73.9614
SRR5252880	dormant buds	no	dormant buds(4 months)	99.7547
SRR5252881	dormant buds	no	dormant buds(4 months)	94.0236
SRR5252878	bud break	no	bud break	78.9669
SRR5252879	bud break	no	bud break	157.375
SRR3744766	flower	no	mature	34.2955
SRR3744767	flower	no	mature	33.0845
SRR3744768	flower	no	mature	32.853
SRR6308190	stigmas	no	open flowers	21.9933
SRR6308181	styles	no	open flowers	29.1002
SRR6308188	filaments	no	open flowers	47.2749
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	14.9326
SRR6308192	pollen	no	open flowers	2.47827
SRR6308191	petals	no	open flowers	53.2239
SRR6308194	sepals	no	open flowers	30.6262
SRR6308193	receptacles	no	open flowers	69.74
SRR6308189	ovaries	no	open flowers	45.8718
SRR3384922	fruit	no	1 week after full bloom	112.463
SRR3384921	fruit	no	2 week after full bloom	83.7141
SRR3384920	fruit	no	3 week after full bloom	68.1219
SRR3384919	fruit	no	4 week after full bloom	69.6877
SRR3384923	fruit	no	5 week after full bloom	50.7297
SRR3384918	fruit	no	6 week after full bloom	67.8873
SRR3384917	fruit	no	8 week after full bloom	75.5472
SRR3384916	fruit	no	10 week after full bloom	48.1696
SRR3384915	fruit	no	12 week after full bloom	68.4592
SRR3384914	fruit	no	14 week after full bloom	58.3144
SRR3384913	fruit	no	16 week after full bloom	64.7249
SRR3384912	fruit	no	18 week after full bloom	51.3083
SRR3384911	fruit	no	19 week after full bloom	53.7342
SRR3384910	fruit	no	20 week after full bloom	48.6194
SRR768128	whole fruit	no	25 days post anthesis	61.2221
SRR768129	whole fruit	no	35 days post anthesis	61.0185
SRR768130	whole fruit	no	60 days post anthesis	57.7864
SRR768131	whole fruit	no	87 days post anthesis	48.7588
SRR7343308	immature fruit flesh	no	immature	30.8523
SRR7343309	immature fruit flesh	no	immature	34.9773
SRR6320494	ripe fruit flesh	no	mature	46.8909
SRR5405143	ripe fruit peel	no	mature	39.3867
SRR6320572	ripe fruit peel	no	mature	55.012
SRR7403504	fruit	uninfected	mature	39.2284
SRR7403506	fruit	uninfected	mature	37.2838
SRR7403507	fruit	uninfected	mature	35.4325
SRR7403500	fruit	infected with penicillium expansum	mature	47.4129
SRR7403501	fruit	infected with penicillium expansum	mature	50.1981
SRR7403508	fruit	infected with penicillium expansum	mature	48.6454
SRR7403502	fruit	infected with penicillium expansum	mature	38.833
SRR7403503	fruit	infected with penicillium expansum	mature	35.0915
SRR7403505	fruit	infected with penicillium expansum	mature	31.6198
SRR1613973	Central seeds	no	20DAPF	74.6949
SRR1613974	Central seeds	no	20DAPF	75.6566
SRR1613975	Central seeds	no	20DAPF	84.5187
SRR1613976	Lateral seeds	no	20DAPF	69.9975
SRR1613977	Lateral seeds	no	20DAPF	80.5017
SRR1613978	Lateral seeds	no	20DAPF	71.9536
SRR3744786	stem	no	mature	41.1236
SRR3744787	stem	no	mature	44.0551
SRR3744772	stem	no	mature	41.2059
SRX765691	seedling shoot apex	no	4-6 week old seedling	74.8167
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	62.5976
SRR1089478	leaf	Virus-free	plantlets	26.3433
SRR1089477	leaf	ASGV-infected	plantlets	23.792
SRR767660	leaf	uninfected	fully developed	47.7851
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	32.2945
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	55.0347
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	136.107
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	39.2049
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	42.2145
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	39.7691
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	48.4582
SRR6308182	young leaf	no	immature leaves	108.079
SRR3744769	leaf	no	mature	35.8513
SRR3744770	leaf	no	mature	31.4224
SRR3744771	leaf	no	mature	35.3588
SRR5405145	leaf	no	mature	16.0895
SRR6320561	leaf	no	mature	32.369