Gene detail

Detail information of MD11G1121300 Annotation

Gene ID	Annotation
MD11G1121300	RNA binding (RRM/RBD/RNP motifs) family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1121300	mRNA	Chr11	11177910	11187719	-

Sequences

CDS:

MD11G1121300

CAAGCCCTTCTCTCACAAGTCCTTCTCTCTCTCTCTCTCTCCATCTCCTCTGTTTCTCTCTCCCTCCCTCTCTTCCTGCGTTGCGATCCTCACACCACAATCTCATCCTTACAGATTCGTCCTCTTCTTCTCGATCCCCAACTGTAATCATGAGTGACCAGGGAGAAAAGACTTGCCCTCTTTGTGCGGAGGAGATGGATTTGACAGATCAGCAATTGAAGCCATGCAAATGTGGTTATGAGATATGTGTTTGGTGTTGGCACCACATAATGGACATGGCTGAGAAGGATGAGACAGATGGGCGGTGTCCTGCATGCCGCACTCCTTATGACAAGGAAAAGATTGTAGGAACAGCTGGAAAGTGTGAGAGGCTGGTTTTAGAAATCAACACTGAGAAAAAGATGAAATCTCAGAAGGCAAAAGTCAAATCTGCTGAAGGGCGGAAGCAGCTCACTAGTGTGCGAGTGATTCAACGGAACCTCGTTTACATAGTTGGGTTGCCTCTTAATCTGGCAGATGAAGATCTTCTGCAGCGCAAAGAATATTTTGGTCAGTATGGGAAGGTTCAAAAAGTTTCCATGTCTCGAACAGCAGCTGGCGTCATTCAGCAATTTCCAAACAATACATGTAGTGTATATATTACATACTCAAAAGAGGAGGAAGCGGTTCGTTGTATTCAAAATGTACATGGGTTCCTCTTGGATGGTAGATCTTTGAGGGCTTGCTTTGGGACCACAAAATATTGTCATGCATGGCTGAGGAATGTGCCTTGCACCAATCCTGATTGTTTGTATCTGCATGAGGTTGGGTCTCAGGAGGATAGTTTCACTAAAGATGAAATAATTTCTGCATACACTAGGGTACAACAAATTACTGGTACAGCAAACAGTATGCAACGGCGTTCGGGGAGTGTTTTGCCTCCACCACTAGATGATTATTGCAACACAAGTTCTGCTTCTGCCGCAGGACCAATTATTAAAAATGGATCAAGTAATACTGGAAGTCTTATTAGAGGTTCTCCTCCAAATGGAAGCTCTGGTAGATCTATTGCTCTCCCAGCTGCAGCCTCATGGGGAACACGTGGTTCAAACTGCCAACCACCAGCTACACATATAATAAGTTCAAATGGACATTCTAAACAGAAACCTGATACAGTCAGAAGCACATTGCCATATTCTGCAGCAACTGGTGCTTCTGTTCAGTCATCTACAGTGCATAGTGATGGAGGAAAGATGTCAGCATTAAATGAAGAAAGTCAGACTTTGCATGCTAAATGTAAACCAGAATCATTGAAGATTGTGAAACAGCATAGTGGTGTGGATTGTCAAAATGATCTGTCTGACGTACCTGCTGCACCTGATGAAGGTTCTGCTTCTGTTAATGTTAGCAACCAGTTATTGGCGACATCTGTATCCAAGGAAAATGATAGAGGCAGTAGCATGCAGCCAAACATTAGCAATCCTACCAACCATCTATCATACAGTTCCGCTCATGAAAAAGAAAACATTGTTTCCACTGAAGAAGTGGTCCAAAACTTATGCTCTGATATCCATTTAATGAGCATTGATAGAAATACCAAGGTTGAAAATTCCAGTATAGCCAGATCTAAGAGTTCACCTTCAGATAACTCCTTTATTAAATCGCCTCGGGACCAACAATATTGTGCTGAGCAGTCTAGAGATCCTCCATCAACTGGTGAGAAAGCTGTCACATCGGTTAATGGGGTGTGTATTACAAAGGAACAATCCAACTGGATGTTAGAGTCACAACCCCAACCAGTGCCAAGTACATCTTCTGAAGTGGAGGAGGATGTACTATCTTTTGACAATCAAAGACTCAAGGATCCAGAAGTGAGTCGGTCAACATATATGCCTAGTTTGCCTAATACAGTACATGCTCCAAATCACTCTAGGCCCCCTTTGTTGCATAATGAGGCTTATGGTGCGGTTTATTCCAATGCTGATTGTCTATTTGTAGATAACAAAGTTGGGGATAGTTCACTTTTATCTAATGGTTACCCTGAAAACATGGTAACCAGATCTTCTGGTTCAGGAAGGCCATTGGAGCATCCCTATCCTCTTCCAAATGAAGTCCCAGGGAAGCACACTGGAAGATTCCTGGATGATGCAGCAAATCCTGATTTCAGTACTGCTGCTGACAAGGGAGAGAGTAGCATAATCTCAAATATATTATCGATGGACTTTGACACATGGGATGATTCACTAACATCACCACAGCATTTCTCCAAATTGTTGGGTGAAACTGATAAACAGTCTGGAGCGCTCAAAATGTCAAGTCCTTGGAAAGTACAAAATAATAATCAGTCCAGATTCTCTTTTGCAAGACAGGAGGATGCTAAAAATCAAGCATTTGATTTACAGTCATCTCTGAATGTCGATGGGCAGTTTTCTAATAACCAGTCATTCCATCAGGGCTTTTCTGAAAATAGAGATTTATATTTGGATAATCTAGGAATTGGTAATGGTTTCCCATCTAGTACTTTTGAAGAATCTGAAAGTCATGCCAGAAATCATTTAGCATTCTCTTCTAACAAGCTTTCTGCGGTTTCAAGGGCTCAAATTTCTGCTCCTCCTGGATTCTCTGTGCCAAGCAGGGCACCACCTCCGGGCTTTACTTCTCATGAGAGAGTGGATCAGGATTTTGACACTATGTCTGGGAATCATATGTATGGTACTTCAACTTTGTTGAGAAACGCATATCAACCTCAGGCAAATGGAAATATTGGGAGCTCTGCAGATATTGAGTTTATGGATCCTGCTATATTGGCAGTTGGTAAGGGGAGACTGCAAGGTGGGCTTAACAACCCAGGCCTAGAAATGAGATCAAATTTTCCTTCGCAGTTGAGTGGGTATGAAAACGATGCAAGGCTTCAACTATTGATGCAAAGATCACTCGCCCCACAACAAAACCTTAGATATCCTGATTTTGGGGATGGTTTTTCTCACGTCAATGATTCTTATGGGATCTCCTCAAGGCTTTTGGAGCAGTCCCAGGCTAGCAATCTTTCTCCTTTTTCTCAAATGTCCCTCCAACAGTCCAGAAACCGGGTCATGTCAAATGGCCACTGGGATGGGTGGAATGAGGTCCAGGGTGGAAGCAATGTAAGTATGGCAGAGCTCCTGAGAAATGAGAGACTAGGATTCAACAAGTTTTATTCTGGTTATGAAGAATCAAAGTTTCGGATGCCCAGTTCAGGCGATCTGTATAATAGAACATTTGGGATGTAATAATGCAAAATAATAGCTTTCCATGGCTTGAGGAATGTTCAAGTGGAGGAACCGAGGGCCGTGTGGTGTTGTGACCTTGTGCTTAAGGATGGGACTGACTCATAACTGGTCTTGCTCTCCGCAGCGTAATGTTGGGTCAAACTCCCCGTACTTTTGGGGTCTGTAATCCTGCAGGTGGGGCGATAAATGCTTGATGCTAAGATTGTACTGTGGGTTGCTGTATATGGTCAATTTCCGATCGGCTGATCATCCCGATGATGAGTATTCAACTCCCTGCTGTACTGATATTTGATTGTTGCTCTCACAACTAGATGGATGAAATCTGGCTGGCCCTTTTTGGGAGTTTAATACCGCGTTAACTGTTTAACATGATAAAACGGATATAAATAAATTACACCTCTTTTTTTTTTCTTCTTTCTCCTTTTGCTTCTCTGTTTGTATTGTGCGTTGCAAAGTTTGAGACCAGAAATTATGAGTGATTGGAATTAAAAAGTAATTCGTTTCATCCAATTATATTCCGAGTAACGAAATTCAGTATATAAACTTAATTCTTGTTGGTGGTTTTCTGAACAAAATAGAAAGCTTTGTATTTATATTTTGTCGATTGAGTTGCATATACGTAGAGCTTTCTTTTCTTTCTCTAGTTCATGATGTGGGTTTTGATGCAGCAGTTTGTTGCCGGGAAATCGACATATTTTCCCGTACATGTGATAGAATGGAAGATAGATGTGTTTGTACCTTTTATCATTACAAGCTGCT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G60170.1	1	RNA binding (RRM/RBD/RNP motifs) family protein
Arabidopsis thaliana	AT5G60170.2	0.996	RNA binding (RRM/RBD/RNP motifs) family protein
Pyrus communis	PCP018199.1	1	-
Pyrus x bretschneideri	Pbr014185.1	1	-
Fragaria vesca	mrna25392.1	1	RNA binding (RRM/RBD/RNP motifs) family protein
Vitis vinifera	GSVIVT01025102001	1	RNA binding (RRM/RBD/RNP motifs) family protein
Solanum lycopersicum	Solyc11g072590.1.1	1	RNA binding (RRM/RBD/RNP motifs) family protein
Populus trichocarpa	Potri.009G026200.5	1	RNA binding (RRM/RBD/RNP motifs) family protein
Nicotiana benthamiana	Niben101Scf11756g01002.1	1	RNA-binding protein rsd1
Oryza sativa	LOC_Os12g01190.2	1	"RNA recognition motif containing protein, putative, expressed"
Zea mays	GRMZM2G400238_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0000166	nucleotide binding	molecular_function
GO:0003676	nucleic acid binding	molecular_function

KEGG

KO	Description	Enzyme
K10643	CCR4-NOT transcription complex subunit 4	EC:2.3.2.27

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14570.2	zf-RING_4	1	46	4.10E-17
PF00076.18	RRM_1	97	175	4.40E-06

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	13.183
SRR5252888	dormant buds	no	dormant buds(0 month)	31.1033
SRR5252889	dormant buds	no	dormant buds(0 month)	31.0516
SRR5252886	dormant buds	no	dormant buds(1 months)	28.7125
SRR5252887	dormant buds	no	dormant buds(1 months)	28.6775
SRR5252884	dormant buds	no	dormant buds(2 months)	30.7836
SRR5252882	dormant buds	no	dormant buds(3 months)	33.9449
SRR5252883	dormant buds	no	dormant buds(3 months)	38.1346
SRR5252880	dormant buds	no	dormant buds(4 months)	33.3315
SRR5252881	dormant buds	no	dormant buds(4 months)	27.6542
SRR5252878	bud break	no	bud break	37.6731
SRR5252879	bud break	no	bud break	23.9478
SRR3744766	flower	no	mature	15.5596
SRR3744767	flower	no	mature	15.5961
SRR3744768	flower	no	mature	15.5049
SRR6308190	stigmas	no	open flowers	18.6749
SRR6308181	styles	no	open flowers	14.17
SRR6308188	filaments	no	open flowers	12.2834
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	19.6521
SRR6308192	pollen	no	open flowers	60.0035
SRR6308191	petals	no	open flowers	14.2525
SRR6308194	sepals	no	open flowers	16.7746
SRR6308193	receptacles	no	open flowers	12.515
SRR6308189	ovaries	no	open flowers	13.3439
SRR3384922	fruit	no	1 week after full bloom	5.86669
SRR3384921	fruit	no	2 week after full bloom	5.13567
SRR3384920	fruit	no	3 week after full bloom	4.10924
SRR3384919	fruit	no	4 week after full bloom	5.94585
SRR3384923	fruit	no	5 week after full bloom	5.67094
SRR3384918	fruit	no	6 week after full bloom	6.0193
SRR3384917	fruit	no	8 week after full bloom	5.37846
SRR3384916	fruit	no	10 week after full bloom	5.67914
SRR3384915	fruit	no	12 week after full bloom	4.07243
SRR3384914	fruit	no	14 week after full bloom	5.94426
SRR3384913	fruit	no	16 week after full bloom	5.88485
SRR3384912	fruit	no	18 week after full bloom	5.28251
SRR3384911	fruit	no	19 week after full bloom	4.71063
SRR3384910	fruit	no	20 week after full bloom	5.78652
SRR768128	whole fruit	no	25 days post anthesis	9.78922
SRR768129	whole fruit	no	35 days post anthesis	5.0619
SRR768130	whole fruit	no	60 days post anthesis	5.77449
SRR768131	whole fruit	no	87 days post anthesis	9.81257
SRR7343308	immature fruit flesh	no	immature	12.5477
SRR7343309	immature fruit flesh	no	immature	8.57266
SRR6320494	ripe fruit flesh	no	mature	9.51054
SRR5405143	ripe fruit peel	no	mature	12.8586
SRR6320572	ripe fruit peel	no	mature	9.38685
SRR7403504	fruit	uninfected	mature	8.43336
SRR7403506	fruit	uninfected	mature	8.4921
SRR7403507	fruit	uninfected	mature	8.36581
SRR7403500	fruit	infected with penicillium expansum	mature	10.6435
SRR7403501	fruit	infected with penicillium expansum	mature	11.72
SRR7403508	fruit	infected with penicillium expansum	mature	11.144
SRR7403502	fruit	infected with penicillium expansum	mature	11.9405
SRR7403503	fruit	infected with penicillium expansum	mature	12.2122
SRR7403505	fruit	infected with penicillium expansum	mature	13.1398
SRR1613973	Central seeds	no	20DAPF	6.4868
SRR1613974	Central seeds	no	20DAPF	7.2749
SRR1613975	Central seeds	no	20DAPF	6.08354
SRR1613976	Lateral seeds	no	20DAPF	7.07086
SRR1613977	Lateral seeds	no	20DAPF	5.90331
SRR1613978	Lateral seeds	no	20DAPF	6.77425
SRR3744786	stem	no	mature	17.8653
SRR3744787	stem	no	mature	17.3706
SRR3744772	stem	no	mature	19.8725
SRX765691	seedling shoot apex	no	4-6 week old seedling	15.7507
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	15.8828
SRR1089478	leaf	Virus-free	plantlets	6.38742
SRR1089477	leaf	ASGV-infected	plantlets	9.02454
SRR767660	leaf	uninfected	fully developed	4.16794
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.20533
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.27726
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.98741
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	3.88238
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	6.8014
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.3934
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	5.46067
SRR6308182	young leaf	no	immature leaves	10.9266
SRR3744769	leaf	no	mature	23.3896
SRR3744770	leaf	no	mature	24.8063
SRR3744771	leaf	no	mature	23.8757
SRR5405145	leaf	no	mature	16.8748
SRR6320561	leaf	no	mature	13.8548