| Gene ID | Annotation |
|---|---|
| MD11G1129800 | RNAligase |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM0289 | protein transport protein SEC23 ER to Golgi vesicle-mediated transport COPII vesicle coat hydrolase activity intracellular protein transport actin cytoskeleton organization cellulose metabolic process carbohydrate biosynthetic process nucleotide transport basic amino acid transport regulation of ion transport ammonium transport anion transport lateral root development polynucleotide 5'-hydroxyl-kinase activity RNA ligase (ATP) activity 2' SCY1-like protein 2 plant-type cell wall biogenesis cell tip growth amino acid import positive regulation of cell division cotyledon morphogenesis root hair cell differentiation GPI anchor metabolic process RNA-binding protein Musashi tRNA splicing negative regulation of programmed cell death transporter activity |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD11G1129800 | mRNA | Chr11 | 11772293 | 11793872 | + |
| CDS: |
| MD11G1129800 |
| Protein: |
| MD11G1129800 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G07910.2 | 1 | AtRLG1;ATRNL;RNL|AtRLG1;ARABIDOPSIS THALIANA RNA LIGASE;RNAligase |
| Arabidopsis thaliana | AT1G07910.1 | 1 | AtRLG1;ATRNL;RNL|AtRLG1;ARABIDOPSIS THALIANA RNA LIGASE;RNAligase |
| Prunus persica | Prupe.6G094700.1.p | 1 | RNAligase |
| Pyrus communis | PCP017043.1 | 1 | - |
| Pyrus x bretschneideri | Pbr034443.1 | 1 | - |
| Rosa multiflora | Rmu_sc0006568.1_g000004.1 | 1 | - |
| Rubus occidentalis | Ro04_G20542 | 1 | - |
| Fragaria vesca | mrna32598.1 | 1 | RNAligase |
| Vitis vinifera | GSVIVT01025133001 | 1 | RNAligase |
| Solanum lycopersicum | Solyc11g072420.1.1 | 1 | RNAligase |
| Populus trichocarpa | Potri.016G083100.1 | 1 | RNAligase |
| Nicotiana benthamiana | Niben101Scf04639g12011.1 | 1 | RNA ligase isoform 3 [Triticum aestivum] |
| Oryza sativa | LOC_Os07g09400.1 | 1 | "RNA ligase isoform 1, putative, expressed" |
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08302.7 | tRNA_lig_CPD | 1021 | 1176 | 5.10E-06 |
 |