Gene detail

Detail information of MD11G1153400 Annotation

Gene ID	Annotation
MD11G1153400	Protein kinase superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0261	nucleotide biosynthetic process post-embryonic organ development leucine-tRNA ligase activity regulation of auxin polar transport leucyl-tRNA aminoacylation lateral root formation root meristem growth cytosol spermidine biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1153400	mRNA	Chr11	14711816	14714659	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:4.5.7

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP010558.1	1	-
Pyrus x bretschneideri	Pbr030399.1	1	-
Vitis vinifera	GSVIVT01031427001	1	Protein kinase superfamily protein
Populus trichocarpa	Potri.004G190400.1	1	Protein kinase superfamily protein
Populus trichocarpa	Potri.009G151500.1	0.656	Protein kinase superfamily protein

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process

KEGG

KO	Description	Enzyme
K08832	serine/threonine-protein kinase SRPK3	EC:2.7.11.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	40	179	3.40E-19
PF00069.21	Pkinase	306	473	3.50E-21

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.45872
SRR5252888	dormant buds	no	dormant buds(0 month)	14.5564
SRR5252889	dormant buds	no	dormant buds(0 month)	11.9687
SRR5252886	dormant buds	no	dormant buds(1 months)	13.1775
SRR5252887	dormant buds	no	dormant buds(1 months)	10.3909
SRR5252884	dormant buds	no	dormant buds(2 months)	17.8568
SRR5252882	dormant buds	no	dormant buds(3 months)	12.6632
SRR5252883	dormant buds	no	dormant buds(3 months)	10.5462
SRR5252880	dormant buds	no	dormant buds(4 months)	17.0613
SRR5252881	dormant buds	no	dormant buds(4 months)	10.5708
SRR5252878	bud break	no	bud break	11.7786
SRR5252879	bud break	no	bud break	11.0173
SRR3744766	flower	no	mature	4.59902
SRR3744767	flower	no	mature	3.87286
SRR3744768	flower	no	mature	3.53765
SRR6308190	stigmas	no	open flowers	1.65747
SRR6308181	styles	no	open flowers	2.23235
SRR6308188	filaments	no	open flowers	2.04688
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.864618
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.67095
SRR6308194	sepals	no	open flowers	3.31575
SRR6308193	receptacles	no	open flowers	4.98143
SRR6308189	ovaries	no	open flowers	2.59946
SRR3384922	fruit	no	1 week after full bloom	4.31848
SRR3384921	fruit	no	2 week after full bloom	3.84958
SRR3384920	fruit	no	3 week after full bloom	3.71244
SRR3384919	fruit	no	4 week after full bloom	3.87711
SRR3384923	fruit	no	5 week after full bloom	3.93527
SRR3384918	fruit	no	6 week after full bloom	3.6309
SRR3384917	fruit	no	8 week after full bloom	3.81761
SRR3384916	fruit	no	10 week after full bloom	4.10815
SRR3384915	fruit	no	12 week after full bloom	4.81693
SRR3384914	fruit	no	14 week after full bloom	4.84161
SRR3384913	fruit	no	16 week after full bloom	4.20192
SRR3384912	fruit	no	18 week after full bloom	4.78828
SRR3384911	fruit	no	19 week after full bloom	4.81765
SRR3384910	fruit	no	20 week after full bloom	4.33613
SRR768128	whole fruit	no	25 days post anthesis	4.84523
SRR768129	whole fruit	no	35 days post anthesis	4.70469
SRR768130	whole fruit	no	60 days post anthesis	5.44638
SRR768131	whole fruit	no	87 days post anthesis	5.44249
SRR7343308	immature fruit flesh	no	immature	4.50073
SRR7343309	immature fruit flesh	no	immature	5.48789
SRR6320494	ripe fruit flesh	no	mature	4.79385
SRR5405143	ripe fruit peel	no	mature	4.87953
SRR6320572	ripe fruit peel	no	mature	2.08355
SRR7403504	fruit	uninfected	mature	5.0573
SRR7403506	fruit	uninfected	mature	4.89503
SRR7403507	fruit	uninfected	mature	4.4844
SRR7403500	fruit	infected with penicillium expansum	mature	1.0943
SRR7403501	fruit	infected with penicillium expansum	mature	0.992396
SRR7403508	fruit	infected with penicillium expansum	mature	2.08119
SRR7403502	fruit	infected with penicillium expansum	mature	1.25708
SRR7403503	fruit	infected with penicillium expansum	mature	1.74103
SRR7403505	fruit	infected with penicillium expansum	mature	2.1203
SRR1613973	Central seeds	no	20DAPF	6.94667
SRR1613974	Central seeds	no	20DAPF	6.52853
SRR1613975	Central seeds	no	20DAPF	6.65648
SRR1613976	Lateral seeds	no	20DAPF	5.88445
SRR1613977	Lateral seeds	no	20DAPF	6.33837
SRR1613978	Lateral seeds	no	20DAPF	6.25216
SRR3744786	stem	no	mature	6.22469
SRR3744787	stem	no	mature	7.03923
SRR3744772	stem	no	mature	6.71477
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.51538
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.60569
SRR1089478	leaf	Virus-free	plantlets	3.34159
SRR1089477	leaf	ASGV-infected	plantlets	3.91967
SRR767660	leaf	uninfected	fully developed	3.47293
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	3.13263
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.5944
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.13622
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.52334
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.88598
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.21695
SRR6308182	young leaf	no	immature leaves	5.57884
SRR3744769	leaf	no	mature	6.36618
SRR3744770	leaf	no	mature	5.31491
SRR3744771	leaf	no	mature	6.17487
SRR5405145	leaf	no	mature	1.15978
SRR6320561	leaf	no	mature	4.06342