Gene detail

Detail information of MD11G1172700 Annotation

Gene ID	Annotation
MD11G1172700	E2F transcription factor 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1172700	mRNA	Chr11	19163260	19168828	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	E2F-DP

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP027944.1	1	-
Pyrus x bretschneideri	Pbr042159.1	1	-
Rosa multiflora	Rmu_sc0003154.1_g000003.1	1	-
Rubus occidentalis	Ro03_G24707	1	-
Fragaria vesca	mrna08432.1	1	E2F transcription factor 1
Vitis vinifera	GSVIVT01036059001	1	E2F transcription factor 1
Solanum lycopersicum	Solyc11g068800.1.1	1	E2F transcription factor 1
Populus trichocarpa	Potri.004G200800.1	1	E2F transcription factor 1
Populus trichocarpa	Potri.009G161900.1	0.667	E2F transcription factor 1
Nicotiana benthamiana	Niben101Scf08034g00003.1	1	E2F transcription factor 1 LENGTH=469
Nicotiana benthamiana	Niben101Scf01359g03007.1	0.788	E2F transcription factor 1 LENGTH=469
Oryza sativa	LOC_Os04g33950.1	1	"E2F family transcription factor protein, putative, expressed"
Zea mays	GRMZM2G041701_P01	1	Transcription factor E2F3;

Gene Ontology

GO term	Description	Category
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0005667	transcription factor complex	cellular component

KEGG

KO	Description	Enzyme
K06620	transcription factor E2F3	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02319.16	E2F_TDP	144	207	7.00E-25
PF16421.1	E2F_CC-MB	223	322	1.20E-32

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.55597
SRR5252888	dormant buds	no	dormant buds(0 month)	1.1075
SRR5252889	dormant buds	no	dormant buds(0 month)	1.4968
SRR5252886	dormant buds	no	dormant buds(1 months)	1.28962
SRR5252887	dormant buds	no	dormant buds(1 months)	0.872205
SRR5252884	dormant buds	no	dormant buds(2 months)	1.29342
SRR5252882	dormant buds	no	dormant buds(3 months)	1.59659
SRR5252883	dormant buds	no	dormant buds(3 months)	1.68539
SRR5252880	dormant buds	no	dormant buds(4 months)	2.29052
SRR5252881	dormant buds	no	dormant buds(4 months)	1.98969
SRR5252878	bud break	no	bud break	2.38062
SRR5252879	bud break	no	bud break	1.7049
SRR3744766	flower	no	mature	6.54048
SRR3744767	flower	no	mature	7.61558
SRR3744768	flower	no	mature	7.33493
SRR6308190	stigmas	no	open flowers	4.52491
SRR6308181	styles	no	open flowers	5.46333
SRR6308188	filaments	no	open flowers	2.46024
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.64508
SRR6308192	pollen	no	open flowers	10.8268
SRR6308191	petals	no	open flowers	2.27867
SRR6308194	sepals	no	open flowers	2.46314
SRR6308193	receptacles	no	open flowers	2.30311
SRR6308189	ovaries	no	open flowers	3.41347
SRR3384922	fruit	no	1 week after full bloom	1.44796
SRR3384921	fruit	no	2 week after full bloom	1.87068
SRR3384920	fruit	no	3 week after full bloom	1.55813
SRR3384919	fruit	no	4 week after full bloom	1.56287
SRR3384923	fruit	no	5 week after full bloom	1.09515
SRR3384918	fruit	no	6 week after full bloom	1.26267
SRR3384917	fruit	no	8 week after full bloom	1.1315
SRR3384916	fruit	no	10 week after full bloom	1.55157
SRR3384915	fruit	no	12 week after full bloom	1.30438
SRR3384914	fruit	no	14 week after full bloom	1.45248
SRR3384913	fruit	no	16 week after full bloom	0.551865
SRR3384912	fruit	no	18 week after full bloom	1.03579
SRR3384911	fruit	no	19 week after full bloom	0.84443
SRR3384910	fruit	no	20 week after full bloom	0.894518
SRR768128	whole fruit	no	25 days post anthesis	2.58735
SRR768129	whole fruit	no	35 days post anthesis	2.59423
SRR768130	whole fruit	no	60 days post anthesis	0.621353
SRR768131	whole fruit	no	87 days post anthesis	1.01334
SRR7343308	immature fruit flesh	no	immature	2.20711
SRR7343309	immature fruit flesh	no	immature	1.37633
SRR6320494	ripe fruit flesh	no	mature	0.792711
SRR5405143	ripe fruit peel	no	mature	2.30855
SRR6320572	ripe fruit peel	no	mature	1.14728
SRR7403504	fruit	uninfected	mature	1.60851
SRR7403506	fruit	uninfected	mature	1.58953
SRR7403507	fruit	uninfected	mature	1.49682
SRR7403500	fruit	infected with penicillium expansum	mature	1.20695
SRR7403501	fruit	infected with penicillium expansum	mature	0.796037
SRR7403508	fruit	infected with penicillium expansum	mature	0.789053
SRR7403502	fruit	infected with penicillium expansum	mature	1.4974
SRR7403503	fruit	infected with penicillium expansum	mature	1.73442
SRR7403505	fruit	infected with penicillium expansum	mature	1.50336
SRR1613973	Central seeds	no	20DAPF	0.934708
SRR1613974	Central seeds	no	20DAPF	0.709259
SRR1613975	Central seeds	no	20DAPF	0.819791
SRR1613976	Lateral seeds	no	20DAPF	0.657001
SRR1613977	Lateral seeds	no	20DAPF	0.952957
SRR1613978	Lateral seeds	no	20DAPF	0.63219
SRR3744786	stem	no	mature	6.06473
SRR3744787	stem	no	mature	6.55045
SRR3744772	stem	no	mature	6.87162
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.89809
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.23537
SRR1089478	leaf	Virus-free	plantlets	2.24649
SRR1089477	leaf	ASGV-infected	plantlets	2.16079
SRR767660	leaf	uninfected	fully developed	0.546955
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.923905
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.949428
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.966152
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.09208
SRR6308182	young leaf	no	immature leaves	6.54279
SRR3744769	leaf	no	mature	3.85627
SRR3744770	leaf	no	mature	5.11532
SRR3744771	leaf	no	mature	5.12674
SRR5405145	leaf	no	mature	6.7157
SRR6320561	leaf	no	mature	2.23888