Gene detail

Detail information of MD11G1196400 Annotation

Gene ID	Annotation
MD11G1196400	ARM repeat superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1196400	mRNA	Chr11	28128772	28141892	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
--	--	--	--

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0051028	mRNA transport	biological_process
GO:0016070	RNA metabolic process	biological_process
GO:0000339	RNA cap binding	molecular_function
GO:0005846	nuclear cap binding complex	cellular component
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K12882	nuclear cap-binding protein subunit 1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09088.7	MIF4G_like	317	380	2.80E-05

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.36898
SRR5252888	dormant buds	no	dormant buds(0 month)	10.8421
SRR5252889	dormant buds	no	dormant buds(0 month)	13.0928
SRR5252886	dormant buds	no	dormant buds(1 months)	7.34543
SRR5252887	dormant buds	no	dormant buds(1 months)	11.6214
SRR5252884	dormant buds	no	dormant buds(2 months)	8.21713
SRR5252882	dormant buds	no	dormant buds(3 months)	8.09925
SRR5252883	dormant buds	no	dormant buds(3 months)	13.0834
SRR5252880	dormant buds	no	dormant buds(4 months)	12.1956
SRR5252881	dormant buds	no	dormant buds(4 months)	12.6709
SRR5252878	bud break	no	bud break	11.0172
SRR5252879	bud break	no	bud break	11.8253
SRR3744766	flower	no	mature	5.23142
SRR3744767	flower	no	mature	5.15964
SRR3744768	flower	no	mature	5.3071
SRR6308190	stigmas	no	open flowers	1.12291
SRR6308181	styles	no	open flowers	2.4123
SRR6308188	filaments	no	open flowers	3.1927
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.58813
SRR6308192	pollen	no	open flowers	4.26061
SRR6308191	petals	no	open flowers	4.08883
SRR6308194	sepals	no	open flowers	3.96313
SRR6308193	receptacles	no	open flowers	6.70384
SRR6308189	ovaries	no	open flowers	3.81243
SRR3384922	fruit	no	1 week after full bloom	0.133032
SRR3384921	fruit	no	2 week after full bloom	0.359996
SRR3384920	fruit	no	3 week after full bloom	0.126793
SRR3384919	fruit	no	4 week after full bloom	0.058569
SRR3384923	fruit	no	5 week after full bloom	0.111397
SRR3384918	fruit	no	6 week after full bloom	0.124008
SRR3384917	fruit	no	8 week after full bloom	0.089518
SRR3384916	fruit	no	10 week after full bloom	0.174437
SRR3384915	fruit	no	12 week after full bloom	0.206392
SRR3384914	fruit	no	14 week after full bloom	0.467065
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0.147504
SRR3384911	fruit	no	19 week after full bloom	0.353684
SRR3384910	fruit	no	20 week after full bloom	1.44001
SRR768128	whole fruit	no	25 days post anthesis	2.71892
SRR768129	whole fruit	no	35 days post anthesis	0.351268
SRR768130	whole fruit	no	60 days post anthesis	1.7668
SRR768131	whole fruit	no	87 days post anthesis	1.66236
SRR7343308	immature fruit flesh	no	immature	4.71761
SRR7343309	immature fruit flesh	no	immature	4.31669
SRR6320494	ripe fruit flesh	no	mature	4.12523
SRR5405143	ripe fruit peel	no	mature	4.6157
SRR6320572	ripe fruit peel	no	mature	5.51085
SRR7403504	fruit	uninfected	mature	2.21412
SRR7403506	fruit	uninfected	mature	2.92362
SRR7403507	fruit	uninfected	mature	2.9159
SRR7403500	fruit	infected with penicillium expansum	mature	2.95663
SRR7403501	fruit	infected with penicillium expansum	mature	3.11376
SRR7403508	fruit	infected with penicillium expansum	mature	3.5711
SRR7403502	fruit	infected with penicillium expansum	mature	2.20878
SRR7403503	fruit	infected with penicillium expansum	mature	3.43622
SRR7403505	fruit	infected with penicillium expansum	mature	2.93035
SRR1613973	Central seeds	no	20DAPF	7.38984
SRR1613974	Central seeds	no	20DAPF	9.09231
SRR1613975	Central seeds	no	20DAPF	5.50685
SRR1613976	Lateral seeds	no	20DAPF	5.97716
SRR1613977	Lateral seeds	no	20DAPF	4.86065
SRR1613978	Lateral seeds	no	20DAPF	7.07868
SRR3744786	stem	no	mature	6.61307
SRR3744787	stem	no	mature	6.78809
SRR3744772	stem	no	mature	5.88978
SRX765691	seedling shoot apex	no	4-6 week old seedling	7.5478
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.63623
SRR1089478	leaf	Virus-free	plantlets	2.16932
SRR1089477	leaf	ASGV-infected	plantlets	2.57356
SRR767660	leaf	uninfected	fully developed	2.32919
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.68041
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.336253
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.95323
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.82502
SRR6308182	young leaf	no	immature leaves	6.67468
SRR3744769	leaf	no	mature	6.78343
SRR3744770	leaf	no	mature	7.68495
SRR3744771	leaf	no	mature	7.3132
SRR5405145	leaf	no	mature	6.3685
SRR6320561	leaf	no	mature	3.33893