Gene detail

Detail information of MD11G1206500 Annotation

Gene ID	Annotation
MD11G1206500	Ribosomal protein S8e family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1206500	mRNA	Chr11	30106503	30108705	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G20290.1	1	Ribosomal protein S8e family protein
Prunus persica	Prupe.4G230200.3.p	1	Ribosomal protein S8e family protein
Prunus persica	Prupe.4G230200.1.p	1	Ribosomal protein S8e family protein
Prunus persica	Prupe.4G230200.2.p	0.885	Ribosomal protein S8e family protein
Pyrus x bretschneideri	Pbr004062.1	1	-
Pyrus x bretschneideri	Pbr025909.1	1	-
Pyrus x bretschneideri	Pbr004031.1	1	-
Rosa multiflora	Rmu_sc0039609.1_g000001.1	1	-
Rubus occidentalis	Ro03_G17962	1	-
Fragaria vesca	mrna03525.1	1	Ribosomal protein S8e family protein
Vitis vinifera	GSVIVT01031566001	1	Ribosomal protein S8e family protein
Vitis vinifera	GSVIVT01037763001	1	Ribosomal protein S8e family protein
Populus trichocarpa	Potri.009G056900.1	1	Ribosomal protein S8e family protein
Populus trichocarpa	Potri.001G262100.1	1	Ribosomal protein S8e family protein
Nicotiana benthamiana	Niben101Scf10676g01010.1	1	40S ribosomal protein S8
Nicotiana benthamiana	Niben101Scf02756g00005.1	1	40S ribosomal protein S8
Nicotiana benthamiana	Niben101Scf04436g03001.1	0.945	40S ribosomal protein S8
Nicotiana benthamiana	Niben101Scf07428g01005.1	0.724	40S ribosomal protein S8
Nicotiana benthamiana	Niben101Scf02912g00004.1	0.621	40S ribosomal protein S8
Oryza sativa	LOC_Os04g28180.1	1	"ribosomal protein, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02995	small subunit ribosomal protein S8e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	269.707
SRR5252888	dormant buds	no	dormant buds(0 month)	95.3229
SRR5252889	dormant buds	no	dormant buds(0 month)	87.7582
SRR5252886	dormant buds	no	dormant buds(1 months)	93.7461
SRR5252887	dormant buds	no	dormant buds(1 months)	90.1987
SRR5252884	dormant buds	no	dormant buds(2 months)	90.4063
SRR5252882	dormant buds	no	dormant buds(3 months)	94.501
SRR5252883	dormant buds	no	dormant buds(3 months)	93.8631
SRR5252880	dormant buds	no	dormant buds(4 months)	124.477
SRR5252881	dormant buds	no	dormant buds(4 months)	159.48
SRR5252878	bud break	no	bud break	99.5465
SRR5252879	bud break	no	bud break	296.955
SRR3744766	flower	no	mature	60.3111
SRR3744767	flower	no	mature	60.8729
SRR3744768	flower	no	mature	58.5245
SRR6308190	stigmas	no	open flowers	59.7939
SRR6308181	styles	no	open flowers	91.7745
SRR6308188	filaments	no	open flowers	173.917
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	45.9357
SRR6308192	pollen	no	open flowers	15.5968
SRR6308191	petals	no	open flowers	168.388
SRR6308194	sepals	no	open flowers	111.469
SRR6308193	receptacles	no	open flowers	194.429
SRR6308189	ovaries	no	open flowers	139.959
SRR3384922	fruit	no	1 week after full bloom	367.145
SRR3384921	fruit	no	2 week after full bloom	325.322
SRR3384920	fruit	no	3 week after full bloom	222.796
SRR3384919	fruit	no	4 week after full bloom	209.901
SRR3384923	fruit	no	5 week after full bloom	160.987
SRR3384918	fruit	no	6 week after full bloom	180.354
SRR3384917	fruit	no	8 week after full bloom	188.402
SRR3384916	fruit	no	10 week after full bloom	147.691
SRR3384915	fruit	no	12 week after full bloom	149.085
SRR3384914	fruit	no	14 week after full bloom	135.413
SRR3384913	fruit	no	16 week after full bloom	149.351
SRR3384912	fruit	no	18 week after full bloom	126.142
SRR3384911	fruit	no	19 week after full bloom	152.084
SRR3384910	fruit	no	20 week after full bloom	118.764
SRR768128	whole fruit	no	25 days post anthesis	180.704
SRR768129	whole fruit	no	35 days post anthesis	169.488
SRR768130	whole fruit	no	60 days post anthesis	123.123
SRR768131	whole fruit	no	87 days post anthesis	91.2644
SRR7343308	immature fruit flesh	no	immature	111.609
SRR7343309	immature fruit flesh	no	immature	126.53
SRR6320494	ripe fruit flesh	no	mature	78.3439
SRR5405143	ripe fruit peel	no	mature	57.9001
SRR6320572	ripe fruit peel	no	mature	115.941
SRR7403504	fruit	uninfected	mature	65.6767
SRR7403506	fruit	uninfected	mature	60.8781
SRR7403507	fruit	uninfected	mature	61.5351
SRR7403500	fruit	infected with penicillium expansum	mature	123.021
SRR7403501	fruit	infected with penicillium expansum	mature	145.086
SRR7403508	fruit	infected with penicillium expansum	mature	129.006
SRR7403502	fruit	infected with penicillium expansum	mature	103.091
SRR7403503	fruit	infected with penicillium expansum	mature	105.165
SRR7403505	fruit	infected with penicillium expansum	mature	102.716
SRR1613973	Central seeds	no	20DAPF	211.229
SRR1613974	Central seeds	no	20DAPF	177.578
SRR1613975	Central seeds	no	20DAPF	215.766
SRR1613976	Lateral seeds	no	20DAPF	180.125
SRR1613977	Lateral seeds	no	20DAPF	222.634
SRR1613978	Lateral seeds	no	20DAPF	195.369
SRR3744786	stem	no	mature	64.0039
SRR3744787	stem	no	mature	68.4476
SRR3744772	stem	no	mature	63.8219
SRX765691	seedling shoot apex	no	4-6 week old seedling	193.916
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	179.214
SRR1089478	leaf	Virus-free	plantlets	93.196
SRR1089477	leaf	ASGV-infected	plantlets	80.541
SRR767660	leaf	uninfected	fully developed	145.239
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	171.443
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	151.904
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	311.61
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	143.371
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	121.195
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	129.885
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	141.898
SRR6308182	young leaf	no	immature leaves	300.009
SRR3744769	leaf	no	mature	55.6013
SRR3744770	leaf	no	mature	54.5165
SRR3744771	leaf	no	mature	53.9612
SRR5405145	leaf	no	mature	45.4096
SRR6320561	leaf	no	mature	113.07