Gene detail

Detail information of MD11G1244900 Annotation

Gene ID	Annotation
MD11G1244900	thioredoxin M-type 4

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1244900	mRNA	Chr11	35559833	35561883	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G15360.1	1	ATHM4;ATM4;TRX-M4\|ARABIDOPSIS THIOREDOXIN M-TYPE 4;thioredoxin M-type 4
Prunus persica	Prupe.4G183200.1.p	1	thioredoxin M-type 4
Pyrus communis	PCP016994.1	1	-
Rosa multiflora	Rmu_sc0001150.1_g000008.1	1	-
Rubus occidentalis	Ro03_G16415	1	-
Fragaria vesca	mrna00320.1	1	thioredoxin M-type 4
Vitis vinifera	GSVIVT01014360001	1	thioredoxin M-type 4
Solanum lycopersicum	Solyc07g063190.2.1	1	thioredoxin M-type 4
Solanum lycopersicum	Solyc01g108020.2.1	1	Thioredoxin superfamily protein
Populus trichocarpa	Potri.011G120700.1	1	thioredoxin M-type 4
Populus trichocarpa	Potri.011G120500.1	1	thioredoxin M-type 4
Nicotiana benthamiana	Niben101Scf02602g00001.1	1	Thioredoxin superfamily protein LENGTH=186
Oryza sativa	LOC_Os04g57930.1	1	"thioredoxin, putative, expressed"
Oryza sativa	LOC_Os02g42700.1	1	"thioredoxin, putative, expressed"
Oryza sativa	LOC_Os04g44830.1	1	"thioredoxin, putative, expressed"
Zea mays	GRMZM2G170008_P01	0.883	Thioredoxin M-type;
Zea mays	GRMZM2G070343_P01	1	Thioredoxin

Gene Ontology

GO term	Description	Category
GO:0006662	glycerol ether metabolic process	biological_process
GO:0045454	cell redox homeostasis	biological_process
GO:0009055	electron carrier activity	molecular_function
GO:0015035	protein disulfide oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.16	Thioredoxin	88	188	6.20E-31

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	42.6387
SRR5252888	dormant buds	no	dormant buds(0 month)	11.8395
SRR5252889	dormant buds	no	dormant buds(0 month)	13.7154
SRR5252886	dormant buds	no	dormant buds(1 months)	5.76524
SRR5252887	dormant buds	no	dormant buds(1 months)	9.99019
SRR5252884	dormant buds	no	dormant buds(2 months)	7.65808
SRR5252882	dormant buds	no	dormant buds(3 months)	9.81415
SRR5252883	dormant buds	no	dormant buds(3 months)	11.0429
SRR5252880	dormant buds	no	dormant buds(4 months)	8.94289
SRR5252881	dormant buds	no	dormant buds(4 months)	8.27187
SRR5252878	bud break	no	bud break	11.2403
SRR5252879	bud break	no	bud break	7.17282
SRR3744766	flower	no	mature	93.8433
SRR3744767	flower	no	mature	84.7348
SRR3744768	flower	no	mature	93.8251
SRR6308190	stigmas	no	open flowers	24.3447
SRR6308181	styles	no	open flowers	20.0226
SRR6308188	filaments	no	open flowers	22.0107
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	10.1947
SRR6308192	pollen	no	open flowers	2.5371
SRR6308191	petals	no	open flowers	13.4193
SRR6308194	sepals	no	open flowers	17.6431
SRR6308193	receptacles	no	open flowers	21.3136
SRR6308189	ovaries	no	open flowers	22.8402
SRR3384922	fruit	no	1 week after full bloom	42.7513
SRR3384921	fruit	no	2 week after full bloom	37.626
SRR3384920	fruit	no	3 week after full bloom	63.119
SRR3384919	fruit	no	4 week after full bloom	51.8921
SRR3384923	fruit	no	5 week after full bloom	51.7746
SRR3384918	fruit	no	6 week after full bloom	57.4496
SRR3384917	fruit	no	8 week after full bloom	66.1389
SRR3384916	fruit	no	10 week after full bloom	67.6706
SRR3384915	fruit	no	12 week after full bloom	55.4788
SRR3384914	fruit	no	14 week after full bloom	68.0347
SRR3384913	fruit	no	16 week after full bloom	64.9093
SRR3384912	fruit	no	18 week after full bloom	94.3613
SRR3384911	fruit	no	19 week after full bloom	80.306
SRR3384910	fruit	no	20 week after full bloom	72.2757
SRR768128	whole fruit	no	25 days post anthesis	23.2331
SRR768129	whole fruit	no	35 days post anthesis	32.615
SRR768130	whole fruit	no	60 days post anthesis	27.7821
SRR768131	whole fruit	no	87 days post anthesis	20.2479
SRR7343308	immature fruit flesh	no	immature	27.1861
SRR7343309	immature fruit flesh	no	immature	41.3278
SRR6320494	ripe fruit flesh	no	mature	71.1179
SRR5405143	ripe fruit peel	no	mature	115.419
SRR6320572	ripe fruit peel	no	mature	102.801
SRR7403504	fruit	uninfected	mature	144.626
SRR7403506	fruit	uninfected	mature	158.969
SRR7403507	fruit	uninfected	mature	148.307
SRR7403500	fruit	infected with penicillium expansum	mature	38.4513
SRR7403501	fruit	infected with penicillium expansum	mature	38.8184
SRR7403508	fruit	infected with penicillium expansum	mature	38.3823
SRR7403502	fruit	infected with penicillium expansum	mature	42.6801
SRR7403503	fruit	infected with penicillium expansum	mature	48.4625
SRR7403505	fruit	infected with penicillium expansum	mature	47.1229
SRR1613973	Central seeds	no	20DAPF	32.071
SRR1613974	Central seeds	no	20DAPF	30.0698
SRR1613975	Central seeds	no	20DAPF	35.7697
SRR1613976	Lateral seeds	no	20DAPF	33.4703
SRR1613977	Lateral seeds	no	20DAPF	35.905
SRR1613978	Lateral seeds	no	20DAPF	31.716
SRR3744786	stem	no	mature	77.1451
SRR3744787	stem	no	mature	74.271
SRR3744772	stem	no	mature	70.4664
SRX765691	seedling shoot apex	no	4-6 week old seedling	21.1491
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	17.4366
SRR1089478	leaf	Virus-free	plantlets	122.636
SRR1089477	leaf	ASGV-infected	plantlets	121.757
SRR767660	leaf	uninfected	fully developed	157.13
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	87.2572
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	132.961
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	139.86
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	125.106
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	119.884
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	101.01
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	115.611
SRR6308182	young leaf	no	immature leaves	14.4315
SRR3744769	leaf	no	mature	107.523
SRR3744770	leaf	no	mature	107.877
SRR3744771	leaf	no	mature	118.766
SRR5405145	leaf	no	mature	49.0901
SRR6320561	leaf	no	mature	26.0985