Gene detail

Detail information of MD11G1264700 Annotation

Gene ID	Annotation
MD11G1264700	RAB GTPase homolog A1B

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1264700	mRNA	Chr11	37968529	37971379	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G16920.1	1	ATRABA1B;BEX5;RAB11;RABA1b\|RAB GTPase homolog A1B;BFA-visualized exocytic trafficking defective 5;
Pyrus communis	PCP015216.1	1	-
Pyrus x bretschneideri	Pbr035263.1	1	-
Rubus occidentalis	Ro03_G19084	1	-
Oryza sativa	LOC_Os01g54590.1	1	"ras-related protein, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0007264	small GTPase mediated signal transduction	biological_process
GO:0006886	intracellular protein transport	biological_process
GO:0016020	membrane	cellular component
GO:0005525	GTP binding	molecular_function
GO:0003924	GTPase activity	molecular_function
GO:0006913	nucleocytoplasmic transport	biological_process
GO:0006184	obsolete GTP catabolic process	biological_process
GO:0005622	intracellular	cellular component

KEGG

KO	Description	Enzyme
K07904	Ras-related protein Rab-11A	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.18	Ras	15	177	9.70E-60

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	14.6608
SRR5252888	dormant buds	no	dormant buds(0 month)	8.26944
SRR5252889	dormant buds	no	dormant buds(0 month)	8.57611
SRR5252886	dormant buds	no	dormant buds(1 months)	13.606
SRR5252887	dormant buds	no	dormant buds(1 months)	7.86824
SRR5252884	dormant buds	no	dormant buds(2 months)	9.6789
SRR5252882	dormant buds	no	dormant buds(3 months)	11.4105
SRR5252883	dormant buds	no	dormant buds(3 months)	12.2481
SRR5252880	dormant buds	no	dormant buds(4 months)	14.7871
SRR5252881	dormant buds	no	dormant buds(4 months)	14.9981
SRR5252878	bud break	no	bud break	17.6063
SRR5252879	bud break	no	bud break	19.0542
SRR3744766	flower	no	mature	2.19713
SRR3744767	flower	no	mature	1.83238
SRR3744768	flower	no	mature	2.13985
SRR6308190	stigmas	no	open flowers	2.54591
SRR6308181	styles	no	open flowers	2.76138
SRR6308188	filaments	no	open flowers	3.46534
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.24796
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	4.87741
SRR6308194	sepals	no	open flowers	3.58173
SRR6308193	receptacles	no	open flowers	13.4805
SRR6308189	ovaries	no	open flowers	6.77334
SRR3384922	fruit	no	1 week after full bloom	37.1528
SRR3384921	fruit	no	2 week after full bloom	34.002
SRR3384920	fruit	no	3 week after full bloom	20.2889
SRR3384919	fruit	no	4 week after full bloom	24.2899
SRR3384923	fruit	no	5 week after full bloom	15.4887
SRR3384918	fruit	no	6 week after full bloom	19.9919
SRR3384917	fruit	no	8 week after full bloom	14.056
SRR3384916	fruit	no	10 week after full bloom	9.89661
SRR3384915	fruit	no	12 week after full bloom	10.6376
SRR3384914	fruit	no	14 week after full bloom	9.43718
SRR3384913	fruit	no	16 week after full bloom	8.94885
SRR3384912	fruit	no	18 week after full bloom	7.07203
SRR3384911	fruit	no	19 week after full bloom	5.25675
SRR3384910	fruit	no	20 week after full bloom	3.05373
SRR768128	whole fruit	no	25 days post anthesis	17.5217
SRR768129	whole fruit	no	35 days post anthesis	26.6015
SRR768130	whole fruit	no	60 days post anthesis	10.4008
SRR768131	whole fruit	no	87 days post anthesis	8.7576
SRR7343308	immature fruit flesh	no	immature	11.314
SRR7343309	immature fruit flesh	no	immature	8.94357
SRR6320494	ripe fruit flesh	no	mature	0.896996
SRR5405143	ripe fruit peel	no	mature	0.527908
SRR6320572	ripe fruit peel	no	mature	0.386507
SRR7403504	fruit	uninfected	mature	1.67948
SRR7403506	fruit	uninfected	mature	1.72744
SRR7403507	fruit	uninfected	mature	1.82931
SRR7403500	fruit	infected with penicillium expansum	mature	0.342687
SRR7403501	fruit	infected with penicillium expansum	mature	0.169513
SRR7403508	fruit	infected with penicillium expansum	mature	0.488804
SRR7403502	fruit	infected with penicillium expansum	mature	0.661354
SRR7403503	fruit	infected with penicillium expansum	mature	0.844205
SRR7403505	fruit	infected with penicillium expansum	mature	0.18971
SRR1613973	Central seeds	no	20DAPF	26.3104
SRR1613974	Central seeds	no	20DAPF	24.9154
SRR1613975	Central seeds	no	20DAPF	28.2772
SRR1613976	Lateral seeds	no	20DAPF	26.3021
SRR1613977	Lateral seeds	no	20DAPF	28.1186
SRR1613978	Lateral seeds	no	20DAPF	26.7496
SRR3744786	stem	no	mature	4.63281
SRR3744787	stem	no	mature	5.43004
SRR3744772	stem	no	mature	4.7936
SRX765691	seedling shoot apex	no	4-6 week old seedling	21.7888
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	16.9113
SRR1089478	leaf	Virus-free	plantlets	7.02265
SRR1089477	leaf	ASGV-infected	plantlets	8.88162
SRR767660	leaf	uninfected	fully developed	8.3575
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	13.0737
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	12.2547
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	5.99906
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.21727
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.6938
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.89485
SRR6308182	young leaf	no	immature leaves	37.7903
SRR3744769	leaf	no	mature	2.87326
SRR3744770	leaf	no	mature	2.63716
SRR3744771	leaf	no	mature	2.8377
SRR5405145	leaf	no	mature	3.5414
SRR6320561	leaf	no	mature	5.58386