Gene detail

Detail information of MD11G1279700 Annotation

Gene ID	Annotation
MD11G1279700	SU(VAR)3-9 homolog 6

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1279700	mRNA	Chr11	39729728	39733774	-

Sequences

CDS:

MD11G1279700

GTCATTTCGCGAGATCGCCGCTGACGCGCGCGCTAAGCTTGCAGCGTGTGCCAAACACTCCCCAAATCACTTCCCCGAAACCCTAATTCTCTTCTCAAATCTCTCAAAATCGCACTTGTCCTGCAATCGTCCGACTGCTAAGCCGGATTATCCGTTGACTAGTTTTTGAGCAATTATTGATACATTTTAGTTTGATTTGGAATTGGAATGGGGGTCGTTGAAGCGATGCAACATTCGGAATCTTCGAGGCGAATTGCTTCACTTAATGGTAGTCATTCTGAGGGGAGATTGGGACGATCCATGGAAAATGGAGAGTGCTCTTTCCGTGCTCCTAACTTAAAGAGGCGTACAGTCTCTGCGGTCCGTGATTTTCCCCTGGGGTGCGGACGGTTTGGTCAGTTAAGGGAAAATTTGAGACGACATGAAGGGGCTGCTTCTGGGGGAAATTTTGACAGTGTACCAACAGAAAATTTGGTTAGTAGGGGTGAAAATGGCGATGCACGTGGGGTTGACAAGCTCGGGCGCTCAAATGTTCATGTGGATGAGACTGACTTGATGAATGGTAAGGATGTGGGTACTGTGGAGAGAATTGAATCAGTGGCAACCTTAGAGCATGAAATTTCTGATTTGCCAAATGACCAACATGGGTTAAACAATTGGAGACCGGTTGAAGAGGCAGCTTCTGTTGTTGCTGCTGAGGCTTTGATTAGCGGGGGTAACGACGATGATGAACAAGGGATTGAAGTGCGAATGGTACCTGCTGGTTCGATCAATGAGACTGCATTGACTAATGGTAAGGCTTTTGGTACTGTGGAGACAGTGGATTTAAATGCATTGCTGAATGAAATATCTGATTCGTTGAAGGACCCACTTCAGCTTGGTGTGGCTACACCAAATGAAGATATGTCTTCTGTTATGCCTGATTCACCACCCAATGGATCCATCTCCATTTCTAGTGGAAATGGTCTGGAGAAGACTGCAGTTAAAAAATATCCTCCTCGAAGAGTAGTATCAGCCATTCGGGACTTCCCTCCTCTTTGTGGAAGAAACCCTGCCCTGGAGGCGAGGAATTTTGGTCAAGAGAGGTCCGCTATGGATGGCGAACCATCATCATTGAACACAGCGAAGACTACTGTGAGACAAACAGGTGAGGATGTTCAAGATAGAGAGTTTCACAAGAGTGAAAATGGAGGGGATATTTCTCTACTAATTGGGGACAAGGTTCAACCAAAAAGCAAGGGACATGCTGTACAAGAATTGGAAAGGCACCATGATGTAAATTATGAGATGAACGTGGTTTCAGAAGATGCTAAAAAAATTTACCATGAACTTTCTCAAGGACGCTATATATTCCAAGGCACGGGGAGTGTTGAACATTCAGAGGAGAAAGTGGGGATGGAGATGGTGGTATACCATGGAAAGGAAAGTCCAAGCGAGACAGACTTAGGTAAACCTTATTATCATAATCAATTGCACGAAGAAGATTTTGTAAGATCGGAAATTACGTCGGAAAAAGCGGTTGTAATGGGTTTGATGACTGCGTCAAACTGTCCATGGAGGATGGGAAAAGTGGTTGACCTACATAAACTAGAAGGTGGAAGTAGCGAAAGAAAACGAAAGAAGCTTGATGTGAAATGTCAGATAGAAAGGTCTAAGGCTATTTCCAGGAAAAAAGATGACTCGGACATTGGAGGAAAGTCTCCAAAGAATATTCTTCCTATATCACAAATGAGTGCTTATGAAGGTACACGTCAGCTTGTTGTCTGGGACAAGAAGGAGTATTCTCTTGAGCTTGACCAGAAAGAAGACTTTTATGTGAGTCCAAGATCAGGTTGTTCTGATGTATGTCCTCCTCCTTTTGGTACTAGTAGTTCAACTAGCAAAGTTCGTGATAATACCCGAAACACGGTGAGGGAGACATTGCGTCTGTTCCAAGCTCTCTGTAGGAAGCTCTTGCGGGAGGAAGAGGGTAAGTCAAAGGAAGGAGGAGTTCCTCGCAAAAGGGTTGATTATTCAGCTGCAAAGATCCTCAAGGATAAAGGAAAATATGTAAATACGGGCAAACAAATCTTGGGAACTGTGCCGGGAGTTGAAGTTGGCGATGAGTTTCATTACAGAGTGGAACTTACTATTGTTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATGTAAAGCATGGTGGGAAGATCCTTGCAACCAGTATCGTTGCATCTGGTGGCTATGCAGATGATTTGGATAATTCAAGTTCCTTGATTTATACAGGCCAAGGAGGAAATGTGATGAATACTGATAAGGAACCTGAAGATCAGAAGCTTGAACGGGGAAACCTTGCTTTAAAGAATAGTCTGGATGAAAAAAATCCTGTTAGAGTGATCCGTGGCTCTGAAGATGGAAGAAGTAAGACATATGTTTATGATGGACTATATTTGGTAGAGAAATGTTGGCAGGATATGGGGTCTCATGGTAAGCTTGTTTTCAAGTTTCAACTTGACAGAGTCCGAGATCAACCAGAGCTTGCTTGGAAAGAAGTGAAGAAGTCCAAAAAATATAAAGTACGGGAAGGTCTATGCATTGATGATATTTCAGGAGGGAAAGAGTCCATTCCTGTCTGTGCTGTGAATACCATAGATGATGAGAAACCTCCAACATTTGTATACATAACTAGCATGATATATCCAGATTGGTGCCGCCCAGTTCCTCCCAAGGGTTGTACCTGTATTGTTGAATGCTCAGATTCTGAGAAATGTTCTTGTGCAGTTGAGAACGGAGGTGAGATCCCATATAACTTCAATGGTGCTATTGTTGAAGCAAAGTCCCTTGTGTATGAGTGTGGTCCTTCTTGTAAGTGTCCTCCTTCTTGTTACAATAGAGTTAGTCAGCGTGGTATCAAATTTCAGCTTGAAATCTTCAAAACTGAATCGAGGGGTTGGGGAGTGAGATCCCTAAATTCCATTCCTTCGGGAAGTTTTATATGTGAGTATATAGGAGAGCTCCTGGAAGAGAAGGAAGCTGAAGAAAGAACTGGGAATGATGAGTATCTGTTTGATATTGGGAATAACTACAGCGACAATTCTCTTTGGGATGGACTTTCAATCCTCATGCCCGATGCACAATCAAGTTCTCATGGAGTTGTGGGGGAAGGTGGATTCACCATTGATGCAGTAGAGTACGGCAATGTGGGAAGATTTATCAACCATAGTTGTTCTCCTAATCTTTATGCCCAAAATGTCCTCTATGATCATGATGACACTAGAATTCCTCACATCATGTTCTTTGCTGCTGAGAACATTCCTCCTTTGCAAGAGTTGACCTATCATTACAATTATATGATAGACCAGGTTCGTGATTCTAATGGCAAGATAAAGAAGAAGAGTTGCTATTGTGGTTCTCCAGAGTGCACTGGCAGACTTTATTGAGGCAGACATCAGAGGAGAATTCTGGGCTACTCGAAAGAGGTGATTTCTAATTACTGGAGGTATCGTACTTGCATATTACGTAATAACATTCAGTCTTTGTACTCTAATGAATTTGCGTTTCAAAGAAAGTAAATACTGTTTTTCTACCCCTTGGTGTTGGCTCTACGGTGTCAAATGGTTTTGCTTTGTTATATAGGCACAGTAGGCATTAATCTTTAGGCTAGTAGTATTACATTTTATTAATGTACAGGGTTGTTAATCATCTGTCTTCATCTATTTTCTTTTACTTGTTCTCTTGAGGAAGATTGTAAATTTTGGTAAGAAATGGTTATCCAGTAATTTTCGTAAGAAATTATGATGAAGAGGGGGGCTCATTGATACGAGGGGGGCTCATTGATACAAGGTATTAGTTTTTCAACAAGT

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	SET
Epigenetic Regulators	SDG

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G22740.1	1	SDG23;SUVH6\|SET DOMAIN PROTEIN 23;SU(VAR)3-9 homolog 6
Arabidopsis thaliana	AT2G22740.2	1	SDG23;SUVH6\|SET DOMAIN PROTEIN 23;SU(VAR)3-9 homolog 6
Prunus persica	Prupe.5G057400.1.p	1	SU(VAR)3-9 homolog 6
Pyrus communis	PCP022781.1	1	-
Pyrus x bretschneideri	Pbr008919.1	1	-
Rosa multiflora	Rmu_sc0007602.1_g000010.1	1	-
Rubus occidentalis	Ro05_G11823	1	-
Fragaria vesca	mrna20484.1	1	SU(VAR)3-9 homolog 6
Solanum lycopersicum	Solyc06g060960.1.1	1	SU(VAR)3-9 homolog 5
Populus trichocarpa	Potri.003G083100.1	1	SU(VAR)3-9 homolog 5
Nicotiana benthamiana	Niben101Scf03852g00025.1	1	Histone-lysine N-methyltransferase 2A
Oryza sativa	LOC_Os09g19830.1	1	"histone-lysine N-methyltransferase, putative, expressed"
Zea mays	GRMZM2G300955_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0018024	histone-lysine N-methyltransferase activity	molecular_function
GO:0042393	histone binding	molecular_function
GO:0005634	nucleus	cellular component
GO:0008270	zinc ion binding	molecular_function
GO:0034968	histone lysine methylation	biological_process

KEGG

KO	Description	Enzyme
K11420	euchromatic histone-lysine N-methyltransferase	EC:2.1.1.43

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02182.13	SAD_SRA	622	768	7.00E-49

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.9311
SRR5252888	dormant buds	no	dormant buds(0 month)	13.8453
SRR5252889	dormant buds	no	dormant buds(0 month)	15.2147
SRR5252886	dormant buds	no	dormant buds(1 months)	13.9462
SRR5252887	dormant buds	no	dormant buds(1 months)	10.348
SRR5252884	dormant buds	no	dormant buds(2 months)	16.2189
SRR5252882	dormant buds	no	dormant buds(3 months)	15.0357
SRR5252883	dormant buds	no	dormant buds(3 months)	7.54524
SRR5252880	dormant buds	no	dormant buds(4 months)	18.6475
SRR5252881	dormant buds	no	dormant buds(4 months)	18.1411
SRR5252878	bud break	no	bud break	20.7586
SRR5252879	bud break	no	bud break	13.6176
SRR3744766	flower	no	mature	7.73002
SRR3744767	flower	no	mature	8.3402
SRR3744768	flower	no	mature	8.19475
SRR6308190	stigmas	no	open flowers	4.65771
SRR6308181	styles	no	open flowers	5.01611
SRR6308188	filaments	no	open flowers	3.91425
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	6.64028
SRR6308192	pollen	no	open flowers	17.076
SRR6308191	petals	no	open flowers	3.35261
SRR6308194	sepals	no	open flowers	5.21279
SRR6308193	receptacles	no	open flowers	4.48934
SRR6308189	ovaries	no	open flowers	5.1211
SRR3384922	fruit	no	1 week after full bloom	2.22228
SRR3384921	fruit	no	2 week after full bloom	2.09366
SRR3384920	fruit	no	3 week after full bloom	2.94176
SRR3384919	fruit	no	4 week after full bloom	2.79023
SRR3384923	fruit	no	5 week after full bloom	1.94704
SRR3384918	fruit	no	6 week after full bloom	2.4168
SRR3384917	fruit	no	8 week after full bloom	2.29847
SRR3384916	fruit	no	10 week after full bloom	2.77005
SRR3384915	fruit	no	12 week after full bloom	2.74544
SRR3384914	fruit	no	14 week after full bloom	2.24986
SRR3384913	fruit	no	16 week after full bloom	2.04217
SRR3384912	fruit	no	18 week after full bloom	2.64656
SRR3384911	fruit	no	19 week after full bloom	1.72871
SRR3384910	fruit	no	20 week after full bloom	2.39867
SRR768128	whole fruit	no	25 days post anthesis	5.18995
SRR768129	whole fruit	no	35 days post anthesis	2.1543
SRR768130	whole fruit	no	60 days post anthesis	4.52628
SRR768131	whole fruit	no	87 days post anthesis	5.57504
SRR7343308	immature fruit flesh	no	immature	4.97892
SRR7343309	immature fruit flesh	no	immature	4.3592
SRR6320494	ripe fruit flesh	no	mature	4.56019
SRR5405143	ripe fruit peel	no	mature	5.87646
SRR6320572	ripe fruit peel	no	mature	4.39297
SRR7403504	fruit	uninfected	mature	3.4226
SRR7403506	fruit	uninfected	mature	3.44619
SRR7403507	fruit	uninfected	mature	3.1442
SRR7403500	fruit	infected with penicillium expansum	mature	2.45555
SRR7403501	fruit	infected with penicillium expansum	mature	2.19517
SRR7403508	fruit	infected with penicillium expansum	mature	2.72186
SRR7403502	fruit	infected with penicillium expansum	mature	2.78955
SRR7403503	fruit	infected with penicillium expansum	mature	2.07714
SRR7403505	fruit	infected with penicillium expansum	mature	2.48127
SRR1613973	Central seeds	no	20DAPF	4.71271
SRR1613974	Central seeds	no	20DAPF	5.62791
SRR1613975	Central seeds	no	20DAPF	4.47054
SRR1613976	Lateral seeds	no	20DAPF	5.09278
SRR1613977	Lateral seeds	no	20DAPF	4.72621
SRR1613978	Lateral seeds	no	20DAPF	4.89172
SRR3744786	stem	no	mature	8.42858
SRR3744787	stem	no	mature	9.36759
SRR3744772	stem	no	mature	9.29725
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.46218
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.12256
SRR1089478	leaf	Virus-free	plantlets	3.33763
SRR1089477	leaf	ASGV-infected	plantlets	4.62316
SRR767660	leaf	uninfected	fully developed	3.99272
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.66412
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.86884
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.08353
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.00052
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.32987
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.0101
SRR6308182	young leaf	no	immature leaves	4.78435
SRR3744769	leaf	no	mature	9.65708
SRR3744770	leaf	no	mature	10.5678
SRR3744771	leaf	no	mature	10.6647
SRR5405145	leaf	no	mature	2.96294
SRR6320561	leaf	no	mature	2.7701