Gene detail

Detail information of MD11G1284600 Annotation

Gene ID	Annotation
MD11G1284600	ribosome recycling factor

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0140	plastid translation isopentenyl diphosphate biosynthetic process 30S ribosomal protein 3 light-harvesting complex II chlorophyll a/b binding protein 5 aromatic amino acid family biosynthetic process chloroplast stroma photosystem II antenna complex 2-phytyl-1 PSII associated light-harvesting complex II chloroplast stromal thylakoid iron-sulfur cluster assembly chloroplast organization

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1284600	mRNA	Chr11	40296529	40300070	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G63190.1	1	"AtcpRRF;cpRRF;HFP108;RRF\|Arabidopsis thaliana chloroplast ribosome recycling factor;chloroplast ribosome recycling factor;HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108;ribosome recycling factor, chloroplast precursor"
Pyrus communis	PCP033841.1	1	-
Pyrus x bretschneideri	Pbr008962.1	1	-
Pyrus x bretschneideri	Pbr008983.1	0.618	-
Rosa multiflora	Rmu_sc0004191.1_g000054.1	1	-
Rubus occidentalis	Ro02_G04084	1	-
Fragaria vesca	mrna27806.1	1	"ribosome recycling factor, chloroplast precursor"
Vitis vinifera	GSVIVT01001148001	1	"ribosome recycling factor, chloroplast precursor"
Solanum lycopersicum	Solyc09g065270.2.1	1	"ribosome recycling factor, chloroplast precursor"
Solanum lycopersicum	Solyc11g007740.1.1	1	Ribosome recycling factor
Populus trichocarpa	Potri.002G052400.1	1	"ribosome recycling factor, chloroplast precursor"
Nicotiana benthamiana	Niben101Scf10908g02001.1	1	Ribosome-recycling factor
Oryza sativa	LOC_Os07g38300.1	1	"ribosome recycling factor, putative, expressed"
Zea mays	GRMZM2G159250_P01	1	Ribosome recycling factor;
Zea mays	GRMZM2G457699_P01	0.786	-

Gene Ontology

GO term	Description	Category
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01765.15	RRF	118	279	3.50E-61

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	85.191
SRR5252888	dormant buds	no	dormant buds(0 month)	4.24445
SRR5252889	dormant buds	no	dormant buds(0 month)	6.55595
SRR5252886	dormant buds	no	dormant buds(1 months)	3.4053
SRR5252887	dormant buds	no	dormant buds(1 months)	0.804259
SRR5252884	dormant buds	no	dormant buds(2 months)	2.40825
SRR5252882	dormant buds	no	dormant buds(3 months)	2.73739
SRR5252883	dormant buds	no	dormant buds(3 months)	4.38655
SRR5252880	dormant buds	no	dormant buds(4 months)	9.64214
SRR5252881	dormant buds	no	dormant buds(4 months)	13.1104
SRR5252878	bud break	no	bud break	11.0444
SRR5252879	bud break	no	bud break	12.0696
SRR3744766	flower	no	mature	1.59783
SRR3744767	flower	no	mature	1.31155
SRR3744768	flower	no	mature	1.59561
SRR6308190	stigmas	no	open flowers	0.761254
SRR6308181	styles	no	open flowers	0.762793
SRR6308188	filaments	no	open flowers	0.984188
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	1.49236
SRR6308193	receptacles	no	open flowers	2.5964
SRR6308189	ovaries	no	open flowers	2.37258
SRR3384922	fruit	no	1 week after full bloom	11.9855
SRR3384921	fruit	no	2 week after full bloom	10.1993
SRR3384920	fruit	no	3 week after full bloom	16.2371
SRR3384919	fruit	no	4 week after full bloom	11.6819
SRR3384923	fruit	no	5 week after full bloom	16.4748
SRR3384918	fruit	no	6 week after full bloom	9.0645
SRR3384917	fruit	no	8 week after full bloom	12.2752
SRR3384916	fruit	no	10 week after full bloom	12.8495
SRR3384915	fruit	no	12 week after full bloom	16.061
SRR3384914	fruit	no	14 week after full bloom	13.384
SRR3384913	fruit	no	16 week after full bloom	7.39221
SRR3384912	fruit	no	18 week after full bloom	6.18498
SRR3384911	fruit	no	19 week after full bloom	7.29491
SRR3384910	fruit	no	20 week after full bloom	3.38937
SRR768128	whole fruit	no	25 days post anthesis	16.029
SRR768129	whole fruit	no	35 days post anthesis	11.8343
SRR768130	whole fruit	no	60 days post anthesis	7.66974
SRR768131	whole fruit	no	87 days post anthesis	6.27508
SRR7343308	immature fruit flesh	no	immature	8.91309
SRR7343309	immature fruit flesh	no	immature	8.45393
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	2.74347
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	1.71372
SRR7403506	fruit	uninfected	mature	1.94276
SRR7403507	fruit	uninfected	mature	1.4679
SRR7403500	fruit	infected with penicillium expansum	mature	0.324088
SRR7403501	fruit	infected with penicillium expansum	mature	0.801565
SRR7403508	fruit	infected with penicillium expansum	mature	0.231137
SRR7403502	fruit	infected with penicillium expansum	mature	0.178702
SRR7403503	fruit	infected with penicillium expansum	mature	0.199596
SRR7403505	fruit	infected with penicillium expansum	mature	0.179413
SRR1613973	Central seeds	no	20DAPF	2.30971
SRR1613974	Central seeds	no	20DAPF	2.69607
SRR1613975	Central seeds	no	20DAPF	2.90735
SRR1613976	Lateral seeds	no	20DAPF	2.70614
SRR1613977	Lateral seeds	no	20DAPF	2.39977
SRR1613978	Lateral seeds	no	20DAPF	2.75539
SRR3744786	stem	no	mature	3.81293
SRR3744787	stem	no	mature	3.46256
SRR3744772	stem	no	mature	3.59154
SRX765691	seedling shoot apex	no	4-6 week old seedling	12.6597
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.8022
SRR1089478	leaf	Virus-free	plantlets	24.9867
SRR1089477	leaf	ASGV-infected	plantlets	27.1123
SRR767660	leaf	uninfected	fully developed	24.1616
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0.917223
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	21.7299
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	9.4597
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	3.65684
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.32252
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.72576
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.66842
SRR6308182	young leaf	no	immature leaves	12.4441
SRR3744769	leaf	no	mature	4.67589
SRR3744770	leaf	no	mature	4.48624
SRR3744771	leaf	no	mature	4.68422
SRR5405145	leaf	no	mature	16.7458
SRR6320561	leaf	no	mature	15.2898