Gene detail

Detail information of MD11G1313600 Annotation

Gene ID	Annotation
MD11G1313600	SPX (SYG1/Pho81/XPR1) domain-containing protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0548	E3 ubiquitin-protein ligase BAH [EC:2.3.2.27] alpha-aminoadipic semialdehyde synthase [EC:1.5.1.8 1.5.1.9] saccharopine dehydrogenase (NADP+ inorganic pyrophosphatase [EC:3.6.1.1] hydrogen-translocating pyrophosphatase activity inorganic diphosphatase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD11G1313600	mRNA	Chr11	42597648	42600287	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G02860.1	1	BAH1;NLA\|BENZOIC ACID HYPERSENSITIVE 1;nitrogen limitation adaptation
Arabidopsis thaliana	AT1G02860.2	0.959	BAH1;NLA\|BENZOIC ACID HYPERSENSITIVE 1;nitrogen limitation adaptation
Pyrus communis	PCP001127.1	1	-
Fragaria vesca	mrna10593.1	1	SPX (SYG1/Pho81/XPR1) domain-containing protein
Vitis vinifera	GSVIVT01027992001	1	SPX (SYG1/Pho81/XPR1) domain-containing protein
Solanum lycopersicum	Solyc09g075040.2.1	1	SPX (SYG1/Pho81/XPR1) domain-containing protein
Populus trichocarpa	Potri.014G130300.1	1	SPX (SYG1/Pho81/XPR1) domain-containing protein
Populus trichocarpa	Potri.002G205400.1	0.622	SPX (SYG1/Pho81/XPR1) domain-containing protein
Nicotiana benthamiana	Niben101Scf05869g00008.1	1	Tripartite motif-containing protein 5
Oryza sativa	LOC_Os07g47590.2	1	expressed protein

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K16275	E3 ubiquitin-protein ligase BAH	EC:2.3.2.27

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.2	zf-C3HC4_3	209	262	3.80E-07

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.26411
SRR5252888	dormant buds	no	dormant buds(0 month)	0.195561
SRR5252889	dormant buds	no	dormant buds(0 month)	0.528608
SRR5252886	dormant buds	no	dormant buds(1 months)	1.32491
SRR5252887	dormant buds	no	dormant buds(1 months)	2.46421
SRR5252884	dormant buds	no	dormant buds(2 months)	0.70274
SRR5252882	dormant buds	no	dormant buds(3 months)	1.1277
SRR5252883	dormant buds	no	dormant buds(3 months)	3.22565
SRR5252880	dormant buds	no	dormant buds(4 months)	0.281362
SRR5252881	dormant buds	no	dormant buds(4 months)	0.780752
SRR5252878	bud break	no	bud break	0.420368
SRR5252879	bud break	no	bud break	0.233071
SRR3744766	flower	no	mature	17.2266
SRR3744767	flower	no	mature	17.9755
SRR3744768	flower	no	mature	20.0831
SRR6308190	stigmas	no	open flowers	4.3453
SRR6308181	styles	no	open flowers	2.39361
SRR6308188	filaments	no	open flowers	0.575963
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	12.3128
SRR6308192	pollen	no	open flowers	8.45462
SRR6308191	petals	no	open flowers	3.1965
SRR6308194	sepals	no	open flowers	0.714974
SRR6308193	receptacles	no	open flowers	0.0950257
SRR6308189	ovaries	no	open flowers	0.772015
SRR3384922	fruit	no	1 week after full bloom	0.59388
SRR3384921	fruit	no	2 week after full bloom	0.428559
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0.0581032
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0.0888059
SRR3384916	fruit	no	10 week after full bloom	0.0576831
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0.132386
SRR3384913	fruit	no	16 week after full bloom	0.233892
SRR3384912	fruit	no	18 week after full bloom	0.14633
SRR3384911	fruit	no	19 week after full bloom	0.070174
SRR3384910	fruit	no	20 week after full bloom	0.0549443
SRR768128	whole fruit	no	25 days post anthesis	0.158671
SRR768129	whole fruit	no	35 days post anthesis	0.174244
SRR768130	whole fruit	no	60 days post anthesis	0.292137
SRR768131	whole fruit	no	87 days post anthesis	0.219894
SRR7343308	immature fruit flesh	no	immature	0.780001
SRR7343309	immature fruit flesh	no	immature	0.389293
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0.321657
SRR7403504	fruit	uninfected	mature	0.805413
SRR7403506	fruit	uninfected	mature	0.502746
SRR7403507	fruit	uninfected	mature	0.918348
SRR7403500	fruit	infected with penicillium expansum	mature	1.41929
SRR7403501	fruit	infected with penicillium expansum	mature	3.08909
SRR7403508	fruit	infected with penicillium expansum	mature	2.12568
SRR7403502	fruit	infected with penicillium expansum	mature	2.26954
SRR7403503	fruit	infected with penicillium expansum	mature	1.7482
SRR7403505	fruit	infected with penicillium expansum	mature	1.96428
SRR1613973	Central seeds	no	20DAPF	1.8673
SRR1613974	Central seeds	no	20DAPF	2.0526
SRR1613975	Central seeds	no	20DAPF	1.54003
SRR1613976	Lateral seeds	no	20DAPF	2.22738
SRR1613977	Lateral seeds	no	20DAPF	1.84614
SRR1613978	Lateral seeds	no	20DAPF	1.93558
SRR3744786	stem	no	mature	5.7964
SRR3744787	stem	no	mature	6.09858
SRR3744772	stem	no	mature	5.08885
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.428334
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.46957
SRR1089478	leaf	Virus-free	plantlets	1.39261
SRR1089477	leaf	ASGV-infected	plantlets	1.96407
SRR767660	leaf	uninfected	fully developed	0.385143
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.27789
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.333625
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.55041
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.47335
SRR6308182	young leaf	no	immature leaves	3.03217
SRR3744769	leaf	no	mature	10.7155
SRR3744770	leaf	no	mature	12.8127
SRR3744771	leaf	no	mature	11.527
SRR5405145	leaf	no	mature	0.902577
SRR6320561	leaf	no	mature	1.65641