Gene detail

Detail information of MD12G1003600 Annotation

Gene ID	Annotation
MD12G1003600	glutamate dehydrogenase 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1003600	mRNA	Chr12	529101	534362	-

Sequences

CDS:

MD12G1003600

CATATATATATATACACACACACACATACATATATTATATATGCGCACACACACAAGTCTCAACTCTCAAGAATATGGGATTCCATTGTAGCAATAGCTAGAGAATTGGATTCTACTTTTGTCCTAATTCTATCGGTTTTAGTCATATGTTCAACACTGACATCTATATATATTTTTATCCACGCTTAAAATTCGACTTCCATCAGCCACTTGACCCTCTTGATCAGTAGAGTCTTTCAACTACACCATTTAAGCTCGATTGATCAGTTTTATTAGCTGCCGCTGCATTTCGGGTTCCTCCTGTTGATCTCTCCCTCTTCTTCTCTCTTCTTCTCTCTCTCTCTTGATTAACCAGTGTTCGTAATAACAGCTAGCTAGAGAAGCAAATTGAAGTAGCTGCTTTTAACTTCTGAGACAGACACTTGAAGAAGGAAGCATGATGAATGCATTAGTGGCAACGAACAGAAACTTTAAGTTGGCTGCTCGGCTTTTAGGATTGGACTCCAAGCTTGAGAAAAGTTTACTTATACCATTTAGGGAAATCAAGGTTGAGTGTACTATACCGAAAGACGATGGTAGTTTGGCTTCATTTGTTGGCTTCAGGGTTCAACATGACAATGCTAGAGGCCCCATGAAGGGAGGAATCAGATATCACCCGGAGGTTGATCCAGATGAGGTGAATGCTTTAGCACAGCTGATGACATGGAAGACGGCAGTAGCCAACATCCCATATGGGGGTGCCAAAGGGGGTATAGGATGTAATCCAGGGGAGTTGAGTCTTTCCGAACTAGAGCGACTCACCAGAGTTTTCACACAAAAGATACACGATCTTATCGGAATTCACACCGATGTTCCAGCACCAGATATGGGGACAGGTCCACAGACCATGGCATGGATACTAGATGAGTACTCAAAGTTTCATGGCTACTCACCTGCAGTAGTGACTGGAAAACCTATTGATCTTGGTGGATCACTAGGAAGAGACGCAGCAACCGGAAGAGGAGTACTTTTTGCGACTGAGGCTTTACTCAATGAGTATGGAAAGAGCATCTCTGGGCAACGGTTTGTTATACAGGGTTTCGGGAACGTAGGCTCGTGGGCTGCCCAGCTAATCCATGAGAGTGGTGGCAAAATAGTTGCAGTGAGTGACATCACTGGAGCCCTAAAGAACAGCGAAGGAATTGACATTCCAAGCCTGGTCAAGCATGTCAAGGACAACAGGGGAGTCAAGGGCTTCCATGGTGGGGATCCAATAGAACCCTGCTCAATCTTGGTTGAAGACTGTGACATTCTCATTCCAGCAGCCCTAGGAGGTGTCATCAACAAGGAAAATGCAAATGACATAAAGGCTAAGTTTATAATCGAAGCGGCTAATCATCCCACTGACCCTGAGGCTGATGAGATCCTGTCAAAGAAGGGTGTTGTAATTCTTCCTGATATATATGCAAACTCTGGAGGAGTTACTGTTAGTTACTTTGAGTGGGTGCAGAACATTCAAGGATTCTTGTGGGATGAAGAGAAGGTGAACAATGAGCTCAAGACATACATGACCAAAGGCTTCAAAGGTGTGAAGGAGATGTGCAAAACCCATAACTGCGACCTCCGGATGGGAGCCTTCACGCTCGGAGTTAACCGCGTTGCAAGGGCGACTGTCCTCAGAGGGTGGGAGGCCTGAGGCTGAACCCGAGCCCGAGACACTGAATAAAGATGAGGGATCTCTGATGAGACTCCGTTTCGTTTTTACTTATTTGGTATTTTGATACCGTACGTACGTCGCATTTAAATAACTTCACCTGCCATTGCTGTTGCCTCCCAATTGGCAACATAGCAAGTAGTTAATTTGTTTGCTACTTGCCACTGGCTGAACTACCTTGAGTGACTTGTGTAAACTCATATATTACAATTTAAAATAATGCCTCGTATCTCTTTCTTGTACATATTTGCGGCTGTTTTTGCTCACACATTACACACGCATAGCTTTACAGAAACCCTACAACAACAACAACAACAAAGCCTTTTCCCACTAAGTGAAGTCGGCTATACAGAAACCCTACCAAACTAAATTTCTAGCATGCCGAGACAACGGCCAAGTTACATGTTGTTCTTCCAAAAGAATCTTCAAAACTAAAACAAGAGTCCTATTTGAAATTTTCTACCAGTATTTCCTACTCTTAGGCCGGTT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G18170.1	1	GDH1\|glutamate dehydrogenase 1
Prunus persica	Prupe.7G004100.2.p	1	glutamate dehydrogenase 1
Prunus persica	Prupe.7G004100.4.p	1	glutamate dehydrogenase 1
Prunus persica	Prupe.7G004100.3.p	1	glutamate dehydrogenase 1
Prunus persica	Prupe.7G004100.5.p	1	glutamate dehydrogenase 1
Prunus persica	Prupe.7G004100.1.p	1	glutamate dehydrogenase 1
Pyrus communis	PCP018019.1	1	-
Pyrus x bretschneideri	Pbr007691.1	1	-
Rosa multiflora	Rmu_ssc0000003.1_g000006.1	1	-
Rubus occidentalis	Ro01_G22494	1	-
Fragaria vesca	mrna10417.1	1	glutamate dehydrogenase 1
Vitis vinifera	GSVIVT01033402001	1	glutamate dehydrogenase 1
Solanum lycopersicum	Solyc10g078550.1.1	1	glutamate dehydrogenase 1
Populus trichocarpa	Potri.013G058300.3	1	glutamate dehydrogenase 1
Nicotiana benthamiana	Niben101Scf09000g00009.1	1	Glutamate dehydrogenase B
Oryza sativa	LOC_Os03g58040.3	1	"glutamate dehydrogenase protein, putative, expressed"
Zea mays	GRMZM2G178415_P01	1	protein_coding

Gene Ontology

GO term	Description	Category
GO:0006520	cellular amino acid metabolic process	biological_process
GO:0055114	oxidation-reduction process	biological_process
GO:0016491	oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
K00261	glutamate dehydrogenase (NAD(P)+)	EC:1.4.1.3

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02812.14	ELFV_dehydrog_N	34	160	1.10E-49
PF00208.17	ELFV_dehydrog	177	409	1.90E-73

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	30.1458
SRR5252888	dormant buds	no	dormant buds(0 month)	2.69945
SRR5252889	dormant buds	no	dormant buds(0 month)	3.69179
SRR5252886	dormant buds	no	dormant buds(1 months)	3.33385
SRR5252887	dormant buds	no	dormant buds(1 months)	3.23953
SRR5252884	dormant buds	no	dormant buds(2 months)	2.58676
SRR5252882	dormant buds	no	dormant buds(3 months)	2.91868
SRR5252883	dormant buds	no	dormant buds(3 months)	3.1804
SRR5252880	dormant buds	no	dormant buds(4 months)	6.14938
SRR5252881	dormant buds	no	dormant buds(4 months)	3.27806
SRR5252878	bud break	no	bud break	10.4769
SRR5252879	bud break	no	bud break	14.2094
SRR3744766	flower	no	mature	1.19743
SRR3744767	flower	no	mature	1.13505
SRR3744768	flower	no	mature	1.41822
SRR6308190	stigmas	no	open flowers	4.6576
SRR6308181	styles	no	open flowers	4.45419
SRR6308188	filaments	no	open flowers	4.34214
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.38011
SRR6308192	pollen	no	open flowers	0.489809
SRR6308191	petals	no	open flowers	3.57171
SRR6308194	sepals	no	open flowers	0.899927
SRR6308193	receptacles	no	open flowers	12.2017
SRR6308189	ovaries	no	open flowers	2.69298
SRR3384922	fruit	no	1 week after full bloom	7.58964
SRR3384921	fruit	no	2 week after full bloom	15.568
SRR3384920	fruit	no	3 week after full bloom	9.40384
SRR3384919	fruit	no	4 week after full bloom	10.559
SRR3384923	fruit	no	5 week after full bloom	15.6978
SRR3384918	fruit	no	6 week after full bloom	13.1592
SRR3384917	fruit	no	8 week after full bloom	4.49427
SRR3384916	fruit	no	10 week after full bloom	4.21296
SRR3384915	fruit	no	12 week after full bloom	1.68774
SRR3384914	fruit	no	14 week after full bloom	1.10393
SRR3384913	fruit	no	16 week after full bloom	0.717379
SRR3384912	fruit	no	18 week after full bloom	1.09399
SRR3384911	fruit	no	19 week after full bloom	0.524632
SRR3384910	fruit	no	20 week after full bloom	0.347576
SRR768128	whole fruit	no	25 days post anthesis	22.2709
SRR768129	whole fruit	no	35 days post anthesis	23.5528
SRR768130	whole fruit	no	60 days post anthesis	7.24096
SRR768131	whole fruit	no	87 days post anthesis	4.68982
SRR7343308	immature fruit flesh	no	immature	8.73923
SRR7343309	immature fruit flesh	no	immature	6.03533
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.124881
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.1898
SRR7403506	fruit	uninfected	mature	0.0891092
SRR7403507	fruit	uninfected	mature	0.0264505
SRR7403500	fruit	infected with penicillium expansum	mature	0.218021
SRR7403501	fruit	infected with penicillium expansum	mature	0.0808845
SRR7403508	fruit	infected with penicillium expansum	mature	0.116618
SRR7403502	fruit	infected with penicillium expansum	mature	0.0901627
SRR7403503	fruit	infected with penicillium expansum	mature	0.0503522
SRR7403505	fruit	infected with penicillium expansum	mature	0.181042
SRR1613973	Central seeds	no	20DAPF	86.4175
SRR1613974	Central seeds	no	20DAPF	72.1494
SRR1613975	Central seeds	no	20DAPF	67.8714
SRR1613976	Lateral seeds	no	20DAPF	64.0489
SRR1613977	Lateral seeds	no	20DAPF	64.0494
SRR1613978	Lateral seeds	no	20DAPF	60.1776
SRR3744786	stem	no	mature	4.11216
SRR3744787	stem	no	mature	4.04985
SRR3744772	stem	no	mature	4.10775
SRX765691	seedling shoot apex	no	4-6 week old seedling	18.5484
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.98724
SRR1089478	leaf	Virus-free	plantlets	20.0286
SRR1089477	leaf	ASGV-infected	plantlets	14.3453
SRR767660	leaf	uninfected	fully developed	12.6827
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	28.8317
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	11.0776
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.83207
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	15.8183
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.25233
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.52202
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	5.67345
SRR6308182	young leaf	no	immature leaves	4.6377
SRR3744769	leaf	no	mature	0.532519
SRR3744770	leaf	no	mature	0.745716
SRR3744771	leaf	no	mature	0.678755
SRR5405145	leaf	no	mature	9.4881
SRR6320561	leaf	no	mature	10.555