Gene detail

Detail information of MD12G1017800 Annotation

Gene ID	Annotation
MD12G1017800	Protein kinase superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0241	intracellular protein transport COPII vesicle coat myosin complex leaf pavement cell development mitochondrion localization peroxisome localization retrograde transport Golgi localization protein N-linked glycosylation gynoecium development cytosol membrane coat exocyst ER body organization actin filament-based movement motor activity clathrin binding vesicle-mediated transport sugar mediated signaling pathway

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1017800	mRNA	Chr12	1713631	1721491	+

Sequences

CDS:

MD12G1017800

TGAAACACCACCGCTTTCGCTTTTTCTCTCTCCGACAGTGGAAATTCTAGAGAGAGAAACTCAGACCTTCTCTGTGGAGTCCTCTGAGTCCTCAAACCTTCATTTTTTTCAAAGATGGCGGGTTTAAGAATTTCTAGGGTTTTGTGACGAACCGATTAGTCCCAAATCTCGATGGAAATGCCCGGTAGGAGATCCAACTACACGCTTCTGAGCCAAGTTCCCGACGACCAAGCGGCGGCGTTTTATGAGACGGAGAGCAAGAACAACAAGGGGAAAGGCGACAGAGGGTTCGATTGGGAAACCGGAGCCGATTTCCGGGCGAATCAACAACCGAATCGGGCCGGGAACCCGTACTCGTCAGCCGGGTTGCAGAGGCAGTCGAGCGGCAGCAGCTTTGCCGAGAGCTCGATTTCCGGCGAGTACTACCCTCCGACCCTATCCACCGCCGCGGTCAGTGAGATCGACGGGTTCGGGTACGTGCCGGACGATGTGTTCAAGGTTAGTGGTGGAGGGGGTGAATTTCGAATGAAAGGTGTGGATGGAGCTGTTACGGCCACTGGTGGCGGCGGCGGTTCTTCTTCAGGGAAGAGCTGGGCTCAGCAGACTGAGGAGAGTTATCAGCTGCAGCTGGCTTTGGCTCTTCGGCTTTCATCGGAGGCTACATGCGCCGATGATCCTAACTTCTTGGATCCAGTGCCGGATGAATCGGCGTCCAGGACGTCCGGCTCTGTTGATGCCGTTTCGCATCGGTTTTGGGTGAATGGCTGTCTGTCATACTTTGACAAAGTGCCTGATGGATTTTACCTAATTCATGGGATAGATCAGTATGTATGGACTGTGTGCACTGATCTGCAAGAAAATGGTCGTATACCATCAATTGAATCATTAAGGTCTGTTGATCCTGGCATTGGTTCAAGCATTGAAGTGGTTTTAATTGATCGACGTAGTGATCCCAGTCTAAAGGAGCTCCAAAATAGGGTTTTAACCATTTCCTGTACTTGCATAAATACAAAAGAGATTGTAGATCATCTGGCAAAGCTTGTGTGCAGTCGCATGGGGGGTTCATCTTCCGTAGGAGAGGATGAAATTTTGTCCATATGGAGGGAGAGCAGCGATGATCTGAAAGATTGCTTAGGATCTGTAGTTGTTCCAATAGGCAGCCTTTCTGTTGGCTTATGTAGACATCGTGCCTTATTATTCAAAGTTCTAGCTGACACAATTGATTTACCTTGTCGAATTGCCAAAGGCTGTCAATATTGTACAAGGGATGACGCCTCCTCTTGTCTTGTCCGGTTTGGGTTGGACAGGGAGTATTTAGTCGATTTGATTGCAAATCCAGGCTACTTGCGCGAGCCTGATTCCTTGCTCAATGGCCCATCATCCATCTCAATTTCTTCACCTCTGCGCTTTCCAAGACTAAAACCAGTTGAACCTACCATTGATTTCAGGTTACTGGCTAAACAGTATTTCTCAGACTGTCAATCGCTTAATCTTGTGTTTGATGAAGCTCCTGCAGGAAGTGCTGTTGATGAGGACAATATACATCCTAAAAAATTTGATAGGAAGAGTACAGAGGGAAAAAACCTAATTTCAAATCTCAGCGGTGACACCTCTGCACATGCCAAAATTCCCCGGACAAGTGGTGATGATAGAAATCCCCAGTTGTTTAATCCTCTTCAAAATATTTTGCACACACCACCCATGGTAAATGATCCAATCCCTCTAAAGTGTATGCCACCTGTAGGGCATAGAGATGGTCCAAGGGTGGATACAATTACAGACTCAAGGTTTGTTGAGGGCGTTCAACTGGTTCCTAGTAAACCAAGTAGAGAGCTCGGGTTCGATATAGAGGATTTGGACATCCCATGGAGTGAGCTCATTATAAAAGAGAGAATCGGTGCAGGTTCTTTTGGAACTGTTCATCGCGCTGATTGGCATGGCTCTGATGTTGCTGTGAAGATTCTAATGGAACAAGATTTTCATGCCGAACGCTTTAAAGAATTTTTGAGTGAGGTTACTATAATGAAGCGCCTGCGACATCCAAATATTGTTCTCTTTATGGGTGCAGTTACCAAGCCTCCAAACTTGTCCATAGTCACGGAATATTTATCAAGAGGTAGCTTGTATAGGCTTTTGCATAAAGCTGGTGCAAGGGAGGCATTGGATGAGAGGCGTCGCTTGAGTATGGCATATGATGTGGCAAAGGGAATGAATTATCTTCATAGACGCAAACCTCCCATTGTTCATCGTGATTTAAAATCTCCAAATCTGTTGGTGGACAAAAAATATACAGTGAAGGTTTGCGACTTTGGTCTTTCCCGTTTGAAGGCAAACACCTTCCTCTCCTCAAAATCAGCTGCCGGGACTCCTGAATGGATGGCACCAGAAGTCCTGCGTGATGAACCATCAAATGAGAAGTCAGATATTTACAGTTTTGGTGTAATATTGTGGGAACTCGCAACAATGCAACAGCCGTGGGGTAATTTAAACCCAGCGCAGGTTGTCGCAGCTGTTGGGTTTAAAAACAAAAGGCTTGAGATTCCACGTGATTTGAATCCTAATGTGGCAGCTATAATTGAGGCTTGTTGGGCCAACGAACCCTGGAAACGACCTTCATTTGCTAGTATCATGGATTCTTTGACGCCGTTGATCAAAGCTCCCGTCGCTCAACCTAGTCGTGCAGATATGCCATTACTTACCTGAATGGGAACGAGTCTTATTCATGCACATAATACAGCATTCGTTAGAGAATTGATGTGTGGCGAGGATGCATGCTGTTCATAGTCTCGGAGCCATTGTACATTTCTTCTCTTATCGCCAATTAAGCATTTTGATTCGTTAACCTAATGAAGGAAACTATGAGTGCCAACGGTGTCTGCATCGCCGTCTCTTCTCTTCTCGCACAAGTCTACCAAAAACCGTTCTGTCTCCCCTTCTTGGGAAAGTTGTATAATTTATATTTCATAATTTTGTAAAAGAGTGTTACTAGTATCGATTACACATCTTTCCCGGCACGGTTTGCCCTTGCCTTCACAAAATGTGAAGGCTAGTCATTCAGTTAGAAGCTGGTTTCTGCTGTTGCTCCCCTAGTGAAATTGAAGAAAACGAAATTAGAAAGTGCCAAGTGCACAAATCTGTTAGGAGGCACGCCTCCGTAGCGATCCGGTCGTCGACAAATTACTATCTTTTTTTCCCTCCTCTTCTCCAAGTTTTAATATTTCGGTCACCGTTGTGTTACATTTGGATTGCAGATCTTGTTCTTATGTCAAAGTTAACCGATAAGAGATGGGTATCGGAAGGCGGGCAAGTATTAGAGAGATTTTCCGGTACGGTAACGCCGCCGATGATGACAAGCAGAGAAATCGGCAGCAAAGTTTTTCTTCTGTAATTTGCATTCCGAACTAATAAACATAATGCGATGCGTTTTTAATTCTTTTTTTTAGCTTTGATTAGACTTAAAGCAGACCAAAAAAGTCTGCAAATGGAATCCACTTTGGTCAATTTATTATTTAAATGCAGGGTGTTACATTATTATGTTCAAGCTTCCTTTGCTTTTGCTTGTTGAATTATGTGATGTATTCGTTGTACCTGACCAAAGTATTATTATAAAATTCGATCCCCCTTTTGTTTAT

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:2.1.3

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.7G117700.1.p	1	Protein kinase superfamily protein
Pyrus communis	PCP016676.1	1	-
Pyrus x bretschneideri	Pbr005495.1	1	-
Rosa multiflora	Rmu_sc0002532.1_g000019.1	1	-
Rubus occidentalis	Ro06_G11887	1	-
Fragaria vesca	mrna30145.1	1	Protein kinase superfamily protein
Vitis vinifera	GSVIVT01033779001	1	Protein kinase superfamily protein
Populus trichocarpa	Potri.006G115800.1	1	Protein kinase superfamily protein
Nicotiana benthamiana	Niben101Scf06769g02003.1	1	Protein kinase superfamily protein LENGTH=821
Oryza sativa	LOC_Os02g32610.3	1	"protein kinase domain containing protein, expressed"
Oryza sativa	LOC_Os09g39320.1	1	"CTR1-like protein kinase, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process

KEGG

KO	Description	Enzyme
K14510	serine/threonine-protein kinase CTR1	EC:2.7.11.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.13	Pkinase_Tyr	570	823	6.10E-71

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	7.1976
SRR5252888	dormant buds	no	dormant buds(0 month)	10.7498
SRR5252889	dormant buds	no	dormant buds(0 month)	11.2028
SRR5252886	dormant buds	no	dormant buds(1 months)	12.8877
SRR5252887	dormant buds	no	dormant buds(1 months)	13.9594
SRR5252884	dormant buds	no	dormant buds(2 months)	12.3334
SRR5252882	dormant buds	no	dormant buds(3 months)	12.7432
SRR5252883	dormant buds	no	dormant buds(3 months)	11.9784
SRR5252880	dormant buds	no	dormant buds(4 months)	8.66485
SRR5252881	dormant buds	no	dormant buds(4 months)	8.19567
SRR5252878	bud break	no	bud break	10.4401
SRR5252879	bud break	no	bud break	10.9852
SRR3744766	flower	no	mature	9.64903
SRR3744767	flower	no	mature	9.62685
SRR3744768	flower	no	mature	9.88599
SRR6308190	stigmas	no	open flowers	9.62412
SRR6308181	styles	no	open flowers	10.0655
SRR6308188	filaments	no	open flowers	10.2409
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	9.44558
SRR6308192	pollen	no	open flowers	3.68147
SRR6308191	petals	no	open flowers	9.01892
SRR6308194	sepals	no	open flowers	9.50073
SRR6308193	receptacles	no	open flowers	7.99375
SRR6308189	ovaries	no	open flowers	8.76293
SRR3384922	fruit	no	1 week after full bloom	6.66337
SRR3384921	fruit	no	2 week after full bloom	5.29718
SRR3384920	fruit	no	3 week after full bloom	4.76838
SRR3384919	fruit	no	4 week after full bloom	5.5595
SRR3384923	fruit	no	5 week after full bloom	5.65292
SRR3384918	fruit	no	6 week after full bloom	5.90592
SRR3384917	fruit	no	8 week after full bloom	5.67462
SRR3384916	fruit	no	10 week after full bloom	5.32832
SRR3384915	fruit	no	12 week after full bloom	6.32701
SRR3384914	fruit	no	14 week after full bloom	6.24588
SRR3384913	fruit	no	16 week after full bloom	5.78203
SRR3384912	fruit	no	18 week after full bloom	7.53361
SRR3384911	fruit	no	19 week after full bloom	5.66897
SRR3384910	fruit	no	20 week after full bloom	6.82169
SRR768128	whole fruit	no	25 days post anthesis	7.75064
SRR768129	whole fruit	no	35 days post anthesis	5.58739
SRR768130	whole fruit	no	60 days post anthesis	5.43623
SRR768131	whole fruit	no	87 days post anthesis	8.69527
SRR7343308	immature fruit flesh	no	immature	12.1204
SRR7343309	immature fruit flesh	no	immature	12.3431
SRR6320494	ripe fruit flesh	no	mature	10.1779
SRR5405143	ripe fruit peel	no	mature	9.46822
SRR6320572	ripe fruit peel	no	mature	10.8413
SRR7403504	fruit	uninfected	mature	8.36103
SRR7403506	fruit	uninfected	mature	8.31871
SRR7403507	fruit	uninfected	mature	8.45952
SRR7403500	fruit	infected with penicillium expansum	mature	31.1579
SRR7403501	fruit	infected with penicillium expansum	mature	31.0426
SRR7403508	fruit	infected with penicillium expansum	mature	34.0044
SRR7403502	fruit	infected with penicillium expansum	mature	30.4469
SRR7403503	fruit	infected with penicillium expansum	mature	27.6522
SRR7403505	fruit	infected with penicillium expansum	mature	28.038
SRR1613973	Central seeds	no	20DAPF	7.5893
SRR1613974	Central seeds	no	20DAPF	7.61185
SRR1613975	Central seeds	no	20DAPF	6.67575
SRR1613976	Lateral seeds	no	20DAPF	6.49521
SRR1613977	Lateral seeds	no	20DAPF	5.83343
SRR1613978	Lateral seeds	no	20DAPF	6.69359
SRR3744786	stem	no	mature	10.8195
SRR3744787	stem	no	mature	11.227
SRR3744772	stem	no	mature	11.6677
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.25241
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	9.82827
SRR1089478	leaf	Virus-free	plantlets	7.46574
SRR1089477	leaf	ASGV-infected	plantlets	6.21643
SRR767660	leaf	uninfected	fully developed	2.18339
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.34694
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.85985
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	6.63517
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.01735
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	5.33586
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.31142
SRR6308182	young leaf	no	immature leaves	7.41443
SRR3744769	leaf	no	mature	8.44798
SRR3744770	leaf	no	mature	9.9488
SRR3744771	leaf	no	mature	9.84369
SRR5405145	leaf	no	mature	8.08881
SRR6320561	leaf	no	mature	9.26425