Gene detail

Detail information of MD12G1018100 Annotation

Gene ID	Annotation
MD12G1018100	ENTH/VHS family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1018100	mRNA	Chr12	1731491	1738397	+

Sequences

CDS:

MD12G1018100

AAAAAACTCCTTTTATATATTTTTCTTGTCTTAAAAGGACCTTCCCCGCTATATATTTCCCTCACACGCAGATGCACACTCTTCTTCTCCATCGCCTTGTTCTTAATCTAACCTAATTCCCAATTCCCCAATCGTCAATCTCGGCTCCGATATTTCAATTTTGTTTTTGTTTTATTCAATTTAATTTGTATTCCTGTAAGAAGAATCAGGGCTTGTATTGATAATCATCCATGTACTTAGGGCTTTCTTATTAATTATTGTGTTGATAACTAGGCCTTTTGCTGTTAGCAGTATACAGTTTTGAATCGAATTTTTTTTACTGATGGCGGAATTGTAATCGAAGATTAGGGATTTAGGGTTAGGGTTTTGATTTCCGAGACTGTGATGGAAATGGAGAGCTCGCGTAGGCCGTTTAGCAGATCGAATGAACCAGGCTTGAAGAAGCCCCGATTGGCCGAAAACCCGAATGGCCGAGCCTTTGGTCAGAGACCCGGTGGCGGAGCTAATCCAGTGCTGTCAAGGTTCAGAGTGAGTGACAGAGACGTGGGGAGCGATGATCCGAATCGCGCGGATGGGGGCTATGTGCCGCAGCCACTGCAGCATCAGGAGCTTGTGAGCCAGTACAAGACGGCGTTGGCGGAGCTCACCTTCAATTCAAAGCCAATTATTACCAATTTGACGATAATTGCCGGCGAGAATGTCCACGCGGCGAAGTCGGTGGCGGCAACTGTATGCGGCAACATTATTGAGGTTCCCAGTGAGCAGAAGTTACCATCACTTTATCTTTTGGACAGTATTGTAAAGAATATCGGAAGGGATTATATCAAATATTTTGCTGCCAGACTCCCTGAGGTATTCTGCAAGGCATATAGGCAGGTTGAACCTCCTATACATCAAAGCATGCGGCATCTTTTTGGAACATGGAAAGGAGTGTTTCCTGCTCAGACGCTTCAGATGATTGAGAAAGAACTCGGATTTTCTTCTACAGCAAATGGTTCATCCTCTGTAGCAGCAACATCAAGACCAGATTCGCAGTCACAACGACCAGCACATAGCATTCATGTGAATCCCAAATATTTGGAAAGGCAACGGCTTCAGCAGCCAGCAAGGGCAAAAGGAATGGCTAGCGACTTTTCTGGGGTTATGGCAAACTCAATTGATGATGATGCAGAGAGGCCAGCCAGAGCAGCAAGTATCAGTGCTGGACGACCATGGGTTGATCCTGCTGTTAAAATGCATCGTTCCAATACAGATGCACTTAGTGATCGTGTTCATGAGGAGAACATTGGTGCTGAATATGGAGAATACGAATATGGTTCAGATCTTCACAGGAATTCAAACCCGGGAATTGGAAGAATTGGTGGGAAGATTACAGAAACACTACCCACCCAAAGAAATGGTTTTAATATCAAGCATGGACTTACAAATTACTCGTCATCTAAATCTACGAATGCTGATCCTCGCTTAAAGACAGCACCAGGCATTGCAACTAGAAACAGTGGTGGCCTGTCTAGTAGCTGGAAGAATTCTGAGGAAGAGGAGTTCATGTGGGATGATATGAACTCAAGATTAACAGATCATGGCCCTCCAGATATTTCTAGTAACTCAAGAAAAGATCACTGGGCTTCTGATGATTCAGAGAAATTGGGCTTTGGAGGTCAGTTTCGTAAACCAAAAGGTGGAAATGATTATGCATTAACAGCTGATATGGATACCTCTGCTAATCCTACTGAACAGAAAGACCTATCTGCTCTTGGTCAGCGAATGTCATCACCTTGGACATTGCAGGACTCTATCGGTATTGACAGGCTGACCCCTTCTGGTACTCCTGTCATTAGTTCGGTTCATTCAGAGCGTTATGCTTCAAGTTTAAGTGGGCTATCGACAAGTGGAGATTCTTCTGTGGCCAGGATGGGAAGTAGAGCACAAGTAGCGTCTTCTCGAATTGGAACGTCAAGTCTAGGGTTTAATGCAGCAGCAGGGCCTACTGGAGCTTTAGGAAAACAACAGCTTCAGTCTGTGAGAGCTGCATCACCATCTGGACAGTCATCGATGCACCAATATTCTCCCTCACCTACATCTGCAGTACATCCCCGTCATCACTCGCAAAGTTTAGCTGACCAAGACTTTGCTGAGGAACCTTTGCCAATTCCAACTCCCAATGTTAGATTGGGCAGCAAAGCAAAATCCCAGCCTCAAGATCTATCTTCGTCAATTCCTGACATCCAATCAAGGCACAAATACCCCTTTCGACAACAACCAGACAGTATAGAGTCTGAATCTTTCGGTCACACTAAGAAGCCTCATGTGCCACAGGTCTCTACTTTTTCAACTCCCTCAACTGTTGGAGATTCTATACCAGATCTTTCAAATGTCCTTGCTGCAGAATCCTCAGGACAGTTGAACACAAGTAGTTTGTTGGCTGCTGTTATGAAGACTGGAATACTCTCTGACAAATCAATTACTTGTAGCCTGCCCAATTTGAATCGTCGGGACATGGGACATATTCCATCACAGTCTGGTGTTCAGCCTCCCTTGCAAAGTGGACCCTCCCCTACCCTTGCACTCCCAGGGCCCAAGGTTGCATCAGCACCTTCATCAGGTCACCTTTCTGGTGAGAACTCGCCAGCTTCCTCAAATGTATCACAGAAGAAGGTAGCACATCTGCCAATTCCACCTAGCCAACCTCCTTCCTCTCTTGATGGCAGTGCGTCAGCAAGTTCAACTGTGGTGAGTAATGCCTCAGATCCAATTTCAAACCTTTTAAGCTCCTTAGTTGCAAAGGGTTTGATATCTGCATCAAAGTCGGAGTCACCCACTCCTGTGCCATCCCAAAAGCTGACTGAACTGCACAACAAGGGCCTAGGTGCACCTGCCTCCAAATCAGTGTCAGTATCTCCAGTTTCAGTTTCAGTCTCTCCAAGTCGTCCTGTTACATCCCAAACTGATGCGTCTCTCCCAGAACCTGTAGCTAAAACATCTGCTGCCTTACCTCAATCTACCAAGACAGAAATACAAAACCTAATAGGCATTGCCTTTAAGCCAGATATAATCCGAGAATTTCATCCAGCTGTGATAGATGAACTTTTTAATGACCTTCCATATACGTGTAGCATATGTGGCCTTAGGCTCAAACTTAAAGAACGGCTTGAGAGACATTTGGAATGGCATGCTTTGAAAAATCCCGAAGGCAGTGGTTCAGTTATGGCATCAAGGAAGTGGTATCCAGATTTAACCAGCTGGGTTGCTGGAAGGACAGTACCCCCTTTGGTACCGGAGGCCATCAATTCAATAGACGAGCCTAATGAGATGATGGATATTGATGAGCCCATAGTTCCAGCAGACGAAAACCAATGTGCATGTGTTATATGTGGTGATATTTTTGAAGATTTTTACTGTCAAGAAAGGGATGAATGGATGTTCAAAGGAGCTTCGTACATGAGTATTCCATCTGCGGCCGGTAAGATGGAAACCACAGAGGAGAGTGTTTTGAAAGGTCCCATTGTGCATGCAAATTGTACAGTGGAAAGTTCACTCTCTGATAGCCATGTTAAATTGGAACCAGATGCTTAGTGCTCGAAGCTCGAAGCTGAAGAGACAAACTCCATGCATTCCAAACTCATGAGGGAAATCCAGGTTTATATAAAGGTGTTTTTAGATGTGAATCTTCAATGCCCTTTTTTCTTGTGCCACAAAATAGTGGTGAGAGCGTTCGACTAGCTTCTCCTTTACAATTTTCCTTTTGTTTAATGCATAGTTTGAGAGAAGAAGAAATACATCCGTTTGCGAGATAGTTTCCATCTCAATGATTTCTCTTATGTGGTGGATGTTTTGCTATATATGTTATGTTTTTTACCTCTCTGAAGCGGTTTTGCGCTTGGTAGAAGCATTTGTGGAGATCTTTCATCATAATTTAGTGCCATTTTTTTTTTGGCTTCTGTAGTGTTTGTTTAT

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	C2H2

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G36480.1	1	ENTH/VHS family protein
Arabidopsis thaliana	AT2G36480.2	1	ENTH/VHS family protein
Arabidopsis thaliana	AT2G36480.3	1	ENTH/VHS family protein
Prunus persica	Prupe.7G117000.2.p	1	ENTH/VHS family protein
Prunus persica	Prupe.7G117000.3.p	1	ENTH/VHS family protein
Prunus persica	Prupe.7G117000.1.p	0.992	ENTH/VHS family protein
Prunus persica	Prupe.7G117000.4.p	0.992	ENTH/VHS family protein
Prunus persica	Prupe.7G117000.5.p	0.609	ENTH/VHS family protein
Prunus persica	Prupe.7G117000.6.p	0.6	ENTH/VHS family protein
Pyrus communis	PCP016673.1	1	-
Pyrus x bretschneideri	Pbr005498.1	1	-
Rosa multiflora	Rmu_sc0002532.1_g000029.1	1	-
Rubus occidentalis	Ro06_G11882	1	-
Fragaria vesca	mrna30148.1	1	ENTH/VHS family protein
Vitis vinifera	GSVIVT01033783001	1	ENTH/VHS family protein
Solanum lycopersicum	Solyc09g009120.2.1	1	ENTH/VHS family protein
Solanum lycopersicum	Solyc12g094490.1.1	1	PCF11P-similar protein 4
Populus trichocarpa	Potri.006G115600.1	1	ENTH/VHS family protein
Nicotiana benthamiana	Niben101Scf06769g01011.1	1	Pre-mRNA cleavage complex 2 protein Pcf11 [Medicago truncatula]
Nicotiana benthamiana	Niben101Scf05193g01008.1	0.816	Pre-mRNA cleavage complex 2 protein Pcf11 [Medicago truncatula]
Oryza sativa	LOC_Os09g39270.1	1	"ZOS9-20 - C2H2 zinc finger protein, expressed"
Zea mays	GRMZM2G142168_P01	1	-
Zea mays	GRMZM2G466560_P01	0.719	-

Gene Ontology

GO term	Description	Category
GO:0046872	metal ion binding	molecular_function

KEGG

KO	Description	Enzyme
K14400	pre-mRNA cleavage complex 2 protein Pcf11	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.13412
SRR5252888	dormant buds	no	dormant buds(0 month)	12.2507
SRR5252889	dormant buds	no	dormant buds(0 month)	14.009
SRR5252886	dormant buds	no	dormant buds(1 months)	11.2268
SRR5252887	dormant buds	no	dormant buds(1 months)	10.6002
SRR5252884	dormant buds	no	dormant buds(2 months)	13.5258
SRR5252882	dormant buds	no	dormant buds(3 months)	11.646
SRR5252883	dormant buds	no	dormant buds(3 months)	10.1568
SRR5252880	dormant buds	no	dormant buds(4 months)	14.9861
SRR5252881	dormant buds	no	dormant buds(4 months)	13.6332
SRR5252878	bud break	no	bud break	12.1279
SRR5252879	bud break	no	bud break	7.73523
SRR3744766	flower	no	mature	8.86462
SRR3744767	flower	no	mature	9.42076
SRR3744768	flower	no	mature	10.2598
SRR6308190	stigmas	no	open flowers	5.03409
SRR6308181	styles	no	open flowers	4.66188
SRR6308188	filaments	no	open flowers	5.12391
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	6.94752
SRR6308192	pollen	no	open flowers	7.76802
SRR6308191	petals	no	open flowers	3.9727
SRR6308194	sepals	no	open flowers	5.49911
SRR6308193	receptacles	no	open flowers	4.85418
SRR6308189	ovaries	no	open flowers	4.32819
SRR3384922	fruit	no	1 week after full bloom	3.514
SRR3384921	fruit	no	2 week after full bloom	3.13372
SRR3384920	fruit	no	3 week after full bloom	2.53094
SRR3384919	fruit	no	4 week after full bloom	3.07659
SRR3384923	fruit	no	5 week after full bloom	3.07629
SRR3384918	fruit	no	6 week after full bloom	3.21981
SRR3384917	fruit	no	8 week after full bloom	3.89621
SRR3384916	fruit	no	10 week after full bloom	3.08926
SRR3384915	fruit	no	12 week after full bloom	3.88234
SRR3384914	fruit	no	14 week after full bloom	3.12441
SRR3384913	fruit	no	16 week after full bloom	3.18464
SRR3384912	fruit	no	18 week after full bloom	4.07338
SRR3384911	fruit	no	19 week after full bloom	3.75822
SRR3384910	fruit	no	20 week after full bloom	3.52445
SRR768128	whole fruit	no	25 days post anthesis	3.54218
SRR768129	whole fruit	no	35 days post anthesis	3.59876
SRR768130	whole fruit	no	60 days post anthesis	6.16675
SRR768131	whole fruit	no	87 days post anthesis	6.84577
SRR7343308	immature fruit flesh	no	immature	4.59537
SRR7343309	immature fruit flesh	no	immature	3.40722
SRR6320494	ripe fruit flesh	no	mature	5.21958
SRR5405143	ripe fruit peel	no	mature	6.55348
SRR6320572	ripe fruit peel	no	mature	7.33741
SRR7403504	fruit	uninfected	mature	4.3208
SRR7403506	fruit	uninfected	mature	4.36483
SRR7403507	fruit	uninfected	mature	4.13764
SRR7403500	fruit	infected with penicillium expansum	mature	6.45925
SRR7403501	fruit	infected with penicillium expansum	mature	5.62342
SRR7403508	fruit	infected with penicillium expansum	mature	5.00593
SRR7403502	fruit	infected with penicillium expansum	mature	5.60364
SRR7403503	fruit	infected with penicillium expansum	mature	6.12622
SRR7403505	fruit	infected with penicillium expansum	mature	5.38754
SRR1613973	Central seeds	no	20DAPF	4.60913
SRR1613974	Central seeds	no	20DAPF	5.23514
SRR1613975	Central seeds	no	20DAPF	4.63412
SRR1613976	Lateral seeds	no	20DAPF	4.03467
SRR1613977	Lateral seeds	no	20DAPF	4.37165
SRR1613978	Lateral seeds	no	20DAPF	4.26701
SRR3744786	stem	no	mature	10.1435
SRR3744787	stem	no	mature	10.2433
SRR3744772	stem	no	mature	10.4671
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.39765
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.56852
SRR1089478	leaf	Virus-free	plantlets	10.0635
SRR1089477	leaf	ASGV-infected	plantlets	10.5578
SRR767660	leaf	uninfected	fully developed	4.22682
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.61514
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.5164
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.42309
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.46281
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.49013
SRR6308182	young leaf	no	immature leaves	5.38046
SRR3744769	leaf	no	mature	12.3026
SRR3744770	leaf	no	mature	12.3229
SRR3744771	leaf	no	mature	12.888
SRR5405145	leaf	no	mature	7.05082
SRR6320561	leaf	no	mature	3.19553