Gene detail

Detail information of MD12G1023700 Annotation

Gene ID	Annotation
MD12G1023700	Integral membrane Yip1 family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0163	pyrimidine ribonucleotide biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1023700	mRNA	Chr12	2396089	2396856	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G36300.1	1	Integral membrane Yip1 family protein
Rosa multiflora	Rmu_sc0014162.1_g000006.1	1	-
Rubus occidentalis	Ro06_G14899	1	-
Vitis vinifera	GSVIVT01033828001	1	Integral membrane Yip1 family protein
Solanum lycopersicum	Solyc05g055300.1.1	1	Integral membrane Yip1 family protein
Populus trichocarpa	Potri.004G190800.1	1	Integral membrane Yip1 family protein
Populus trichocarpa	Potri.009G152600.1	0.757	Integral membrane Yip1 family protein
Nicotiana benthamiana	Niben101Scf03413g00005.1	1	Integral membrane Yip1 family protein LENGTH=255
Nicotiana benthamiana	Niben101Scf00173g04010.1	0.71	Integral membrane Yip1 family protein LENGTH=255
Oryza sativa	LOC_Os03g17990.1	1	"Yip1 domain containing protein, expressed"
Zea mays	GRMZM2G117207_P01	1	Protein YIP1
Zea mays	GRMZM2G024159_P01	0.901	-

Gene Ontology

GO term	Description	Category
GO:0016020	membrane	cellular component

KEGG

KO	Description	Enzyme
K20363	protein transport protein YIP1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04893.13	Yip1	93	233	2.30E-13

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	7.55335
SRR5252888	dormant buds	no	dormant buds(0 month)	1.59873
SRR5252889	dormant buds	no	dormant buds(0 month)	2.00638
SRR5252886	dormant buds	no	dormant buds(1 months)	1.01543
SRR5252887	dormant buds	no	dormant buds(1 months)	3.95709
SRR5252884	dormant buds	no	dormant buds(2 months)	2.58524
SRR5252882	dormant buds	no	dormant buds(3 months)	2.59286
SRR5252883	dormant buds	no	dormant buds(3 months)	2.98232
SRR5252880	dormant buds	no	dormant buds(4 months)	0.862564
SRR5252881	dormant buds	no	dormant buds(4 months)	0.478705
SRR5252878	bud break	no	bud break	1.14552
SRR5252879	bud break	no	bud break	2.06417
SRR3744766	flower	no	mature	14.8905
SRR3744767	flower	no	mature	13.8933
SRR3744768	flower	no	mature	14.1604
SRR6308190	stigmas	no	open flowers	9.12594
SRR6308181	styles	no	open flowers	9.71815
SRR6308188	filaments	no	open flowers	9.23074
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	17.424
SRR6308192	pollen	no	open flowers	28.8622
SRR6308191	petals	no	open flowers	6.86454
SRR6308194	sepals	no	open flowers	8.32053
SRR6308193	receptacles	no	open flowers	8.528
SRR6308189	ovaries	no	open flowers	9.53186
SRR3384922	fruit	no	1 week after full bloom	17.6717
SRR3384921	fruit	no	2 week after full bloom	16.6462
SRR3384920	fruit	no	3 week after full bloom	18.0001
SRR3384919	fruit	no	4 week after full bloom	15.3228
SRR3384923	fruit	no	5 week after full bloom	13.1034
SRR3384918	fruit	no	6 week after full bloom	19.6167
SRR3384917	fruit	no	8 week after full bloom	23.2382
SRR3384916	fruit	no	10 week after full bloom	26.5327
SRR3384915	fruit	no	12 week after full bloom	24.5564
SRR3384914	fruit	no	14 week after full bloom	27.0639
SRR3384913	fruit	no	16 week after full bloom	30.2829
SRR3384912	fruit	no	18 week after full bloom	32.607
SRR3384911	fruit	no	19 week after full bloom	25.1052
SRR3384910	fruit	no	20 week after full bloom	23.925
SRR768128	whole fruit	no	25 days post anthesis	5.32194
SRR768129	whole fruit	no	35 days post anthesis	14.6992
SRR768130	whole fruit	no	60 days post anthesis	27.02
SRR768131	whole fruit	no	87 days post anthesis	14.7508
SRR7343308	immature fruit flesh	no	immature	1.59812
SRR7343309	immature fruit flesh	no	immature	3.99447
SRR6320494	ripe fruit flesh	no	mature	20.2988
SRR5405143	ripe fruit peel	no	mature	26.1119
SRR6320572	ripe fruit peel	no	mature	65.2695
SRR7403504	fruit	uninfected	mature	23.7775
SRR7403506	fruit	uninfected	mature	25.0387
SRR7403507	fruit	uninfected	mature	27.0181
SRR7403500	fruit	infected with penicillium expansum	mature	84.1865
SRR7403501	fruit	infected with penicillium expansum	mature	63.7519
SRR7403508	fruit	infected with penicillium expansum	mature	75.6353
SRR7403502	fruit	infected with penicillium expansum	mature	91.4601
SRR7403503	fruit	infected with penicillium expansum	mature	89.8738
SRR7403505	fruit	infected with penicillium expansum	mature	103.182
SRR1613973	Central seeds	no	20DAPF	15.3226
SRR1613974	Central seeds	no	20DAPF	14.7651
SRR1613975	Central seeds	no	20DAPF	18.6724
SRR1613976	Lateral seeds	no	20DAPF	16.5757
SRR1613977	Lateral seeds	no	20DAPF	17.8068
SRR1613978	Lateral seeds	no	20DAPF	14.983
SRR3744786	stem	no	mature	8.78512
SRR3744787	stem	no	mature	11.1866
SRR3744772	stem	no	mature	10.0154
SRX765691	seedling shoot apex	no	4-6 week old seedling	8.03094
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.30925
SRR1089478	leaf	Virus-free	plantlets	23.3244
SRR1089477	leaf	ASGV-infected	plantlets	24.0571
SRR767660	leaf	uninfected	fully developed	15.573
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.00765
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	17.0291
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	30.1925
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	36.8449
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	14.7348
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	23.8403
SRR6308182	young leaf	no	immature leaves	6.8374
SRR3744769	leaf	no	mature	11.1409
SRR3744770	leaf	no	mature	12.0158
SRR3744771	leaf	no	mature	8.11108
SRR5405145	leaf	no	mature	15.6222
SRR6320561	leaf	no	mature	10.9789